Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001178A_C02 KMC001178A_c02
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89615.1| P0463A02.19 [Oryza sativa (japonica cultivar-gro... 160 2e-38
ref|NP_567229.1| hypothetical protein; protein id: At4g02350.1 [... 157 1e-37
ref|NP_191223.1| putative protein; protein id: At3g56640.1 [Arab... 110 2e-23
gb|AAM15794.1|AC104428_15 Unknown protein [Oryza sativa (japonic... 103 2e-21
ref|NP_650942.1| CG7034-PA [Drosophila melanogaster] gi|24418680... 40 0.031
>dbj|BAB89615.1| P0463A02.19 [Oryza sativa (japonica cultivar-group)]
gi|21104839|dbj|BAB93424.1| B1051E10.38 [Oryza sativa
(japonica cultivar-group)]
Length = 800
Score = 160 bits (404), Expect = 2e-38
Identities = 80/119 (67%), Positives = 96/119 (80%), Gaps = 4/119 (3%)
Frame = -3
Query: 600 SAVTGIDTDIRLLESFADNQGALFSDGD----VDQLKTALVESRQLVNLLSSNHPENFLN 433
SAVTGIDTD+++ E+F ++ +LF D D +++K ALVE+RQLVNLL SN PENFLN
Sbjct: 682 SAVTGIDTDLKMFEAFGESMSSLFVDSDQESAANEMKAALVEARQLVNLLMSNSPENFLN 741
Query: 432 PVIRERSYNALDHKKVVIVSEKLRDPSERLFGTFGSRGARQNPKKKSLDTLIKRLRDVS 256
PVIRE+SYN LD+KKV +SEK RD SE F TFG+RGARQNPKKKSLDTLIKRLR+ S
Sbjct: 742 PVIREKSYNKLDYKKVAAISEKFRDSSESYFSTFGTRGARQNPKKKSLDTLIKRLREAS 800
>ref|NP_567229.1| hypothetical protein; protein id: At4g02350.1 [Arabidopsis thaliana]
gi|7487007|pir||T01315 hypothetical protein T14P8.16 -
Arabidopsis thaliana gi|3193284|gb|AAC19268.1| T14P8.16
gene product [Arabidopsis thaliana]
gi|7268995|emb|CAB80728.1| AT4g02350 [Arabidopsis
thaliana]
Length = 771
Score = 157 bits (397), Expect = 1e-37
Identities = 74/115 (64%), Positives = 95/115 (82%)
Frame = -3
Query: 600 SAVTGIDTDIRLLESFADNQGALFSDGDVDQLKTALVESRQLVNLLSSNHPENFLNPVIR 421
+A+ G+D DI+LL+SF +N L +D + ++K A VE RQ++NLL S+HPENF+NPVIR
Sbjct: 657 AAIKGLDVDIQLLDSFTENLTPLLTDKEAREMKKAFVEIRQMINLLLSSHPENFVNPVIR 716
Query: 420 ERSYNALDHKKVVIVSEKLRDPSERLFGTFGSRGARQNPKKKSLDTLIKRLRDVS 256
ERSYNALD++KV VSEK RDPS+ +FGTFG+RG+RQNPK KSLD LIKRL+DVS
Sbjct: 717 ERSYNALDYRKVATVSEKFRDPSDSIFGTFGTRGSRQNPKNKSLDALIKRLKDVS 771
>ref|NP_191223.1| putative protein; protein id: At3g56640.1 [Arabidopsis thaliana]
gi|24418676|sp|Q9LXX6|SC15_ARATH Probable exocyst complex
component Sec15 gi|11288404|pir||T49065 hypothetical
protein T5P19.290 - Arabidopsis thaliana
gi|7594542|emb|CAB88067.1| putative protein [Arabidopsis
thaliana]
Length = 789
Score = 110 bits (274), Expect = 2e-23
Identities = 54/119 (45%), Positives = 84/119 (70%), Gaps = 6/119 (5%)
Frame = -3
Query: 600 SAVTGIDTDIRLLESFADNQ------GALFSDGDVDQLKTALVESRQLVNLLSSNHPENF 439
+AV+ I+ D+R++E+FAD + ++ +G ++ LVE+RQL+NLLSS+ PENF
Sbjct: 672 NAVSAINHDLRVIENFADERYHSSGLNEIYKEGS---FRSYLVEARQLINLLSSSQPENF 728
Query: 438 LNPVIRERSYNALDHKKVVIVSEKLRDPSERLFGTFGSRGARQNPKKKSLDTLIKRLRD 262
+NPVIRER+YN LD+KKV + EK +D ++ +FG+ +R + KKKS+D L KRL++
Sbjct: 729 MNPVIRERNYNTLDYKKVATICEKFKDSADGIFGSLANRNTKLTAKKKSMDMLKKRLKE 787
>gb|AAM15794.1|AC104428_15 Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|22773247|gb|AAN06853.1| Hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 788
Score = 103 bits (256), Expect = 2e-21
Identities = 58/120 (48%), Positives = 84/120 (69%), Gaps = 5/120 (4%)
Frame = -3
Query: 600 SAVTGIDTDIRLLESFADNQGALFSDGDVDQLKTA-----LVESRQLVNLLSSNHPENFL 436
+AV G+D D++LLE+FA+ + + G VD K LVE RQLVNLL S+ PENF+
Sbjct: 672 NAVMGLDIDLKLLEAFAEEK--FYRTGLVDLGKETTFADCLVEIRQLVNLLLSSQPENFM 729
Query: 435 NPVIRERSYNALDHKKVVIVSEKLRDPSERLFGTFGSRGARQNPKKKSLDTLIKRLRDVS 256
NPVIR R+Y +LD+KKV IV +K +D ++ LFG+ +R +Q+ +K+S+D L +RL+D S
Sbjct: 730 NPVIRGRNYGSLDYKKVAIVCDKYKDFADGLFGSLSNRN-KQDARKRSMDVLKRRLKDFS 788
>ref|NP_650942.1| CG7034-PA [Drosophila melanogaster]
gi|24418680|sp|Q9VDE6|SC15_DROME Exocyst complex
component Sec15 gi|7300701|gb|AAF55848.1| CG7034-PA
[Drosophila melanogaster] gi|28316947|gb|AAO39495.1|
RE55430p [Drosophila melanogaster]
Length = 766
Score = 39.7 bits (91), Expect = 0.031
Identities = 27/116 (23%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Frame = -3
Query: 597 AVTGIDTDIRLLESFADNQGAL-FSDGDVDQLKTALVESRQLVNLLSSNHPENFLNPVIR 421
A+T I+ D+ E FA ++ +G++ + + +RQL++LL + + +
Sbjct: 654 ALTQINLDLMQCEFFAASEPVPGLKEGELSKY---FLRNRQLLDLLILEEWSTYFHDYGK 710
Query: 420 -ERSYNALDHKKVVIVSEKLRDPSERLFGTFGSRGARQNPKKKSLDTLIKRLRDVS 256
E Y+ + + ++++ EK+R+ ++ + R+N KKK L+T++K+L+ ++
Sbjct: 711 QENRYHLVQPQSIIVILEKIREADKKPIFSL----VRKNDKKKLLETVLKQLKHIA 762
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,900,421
Number of Sequences: 1393205
Number of extensions: 10043212
Number of successful extensions: 26821
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 26009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26787
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
