Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001177A_C01 KMC001177A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO80610.1| type 2 phosphatidic acid phosphatase family prote... 32 2.9
emb|CAA06737.1| semenogelin [Callithrix jacchus] 31 8.5
>gb|AAO80610.1| type 2 phosphatidic acid phosphatase family protein [Enterococcus
faecalis V583]
Length = 216
Score = 32.3 bits (72), Expect = 2.9
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +3
Query: 246 NYFDTLTIAQNSCTNLLL*DITIVEFFLMPYQSKFLWLKISCTVVVGIQDQEDRNSVSEL 425
N+F T NS T ++L + I F + Y ++ LWL I+ ++ G+ NS+ +L
Sbjct: 52 NFFIWYTKFANSLTIIILAIVVIALFIVWKYYAEALWLFINTALIAGV-----GNSLLKL 106
Query: 426 RFRDRNACVRH 458
F + + H
Sbjct: 107 FFMRQRPTLEH 117
>emb|CAA06737.1| semenogelin [Callithrix jacchus]
Length = 426
Score = 30.8 bits (68), Expect = 8.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 73 DPSSSKYLGSRLINHTTTKGYV*LNQHIKQNTIHPMT*YRRSKRYDLNTQNQ 228
+ +Y + H +KG V + +HI +H R+SK+YDLN QN+
Sbjct: 16 EQKGQQYSARKDKQHAESKGSVYI-EHIYHVDVHGHDQTRKSKQYDLNAQNK 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,161,377
Number of Sequences: 1393205
Number of extensions: 7295052
Number of successful extensions: 12267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12267
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
