Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001176A_C01 KMC001176A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189443.1| leucine-rich repeat transmembrane protein kinas... 190 1e-47
dbj|BAB01126.1| receptor protein kinase [Arabidopsis thaliana] 190 1e-47
dbj|BAB92869.1| putative receptor protein kinase [Oryza sativa (... 176 3e-43
dbj|BAB85306.1| P0703B11.26 [Oryza sativa (japonica cultivar-gro... 140 1e-32
ref|NP_195809.1| leucine-rich repeat transmembrane protein kinas... 135 4e-31
>ref|NP_189443.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g28040.1 [Arabidopsis thaliana]
Length = 997
Score = 190 bits (483), Expect = 1e-47
Identities = 89/112 (79%), Positives = 103/112 (91%)
Frame = -2
Query: 622 PELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECV 443
PEL CQ+LRVNEKCDVYGFGV+ILELVTGRRPVEYGED+ +IL+DHVRV+LE GNVLEC+
Sbjct: 882 PELECQNLRVNEKCDVYGFGVLILELVTGRRPVEYGEDSFVILSDHVRVMLEQGNVLECI 941
Query: 442 DPSMSHEYPDDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRM 287
DP M +Y +DEVLPVLKLA+VCTSQIPS+RPTMAE+VQILQVI +PVP R+
Sbjct: 942 DPVMEEQYSEDEVLPVLKLALVCTSQIPSNRPTMAEIVQILQVINSPVPHRI 993
>dbj|BAB01126.1| receptor protein kinase [Arabidopsis thaliana]
Length = 1016
Score = 190 bits (483), Expect = 1e-47
Identities = 89/112 (79%), Positives = 103/112 (91%)
Frame = -2
Query: 622 PELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECV 443
PEL CQ+LRVNEKCDVYGFGV+ILELVTGRRPVEYGED+ +IL+DHVRV+LE GNVLEC+
Sbjct: 901 PELECQNLRVNEKCDVYGFGVLILELVTGRRPVEYGEDSFVILSDHVRVMLEQGNVLECI 960
Query: 442 DPSMSHEYPDDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRM 287
DP M +Y +DEVLPVLKLA+VCTSQIPS+RPTMAE+VQILQVI +PVP R+
Sbjct: 961 DPVMEEQYSEDEVLPVLKLALVCTSQIPSNRPTMAEIVQILQVINSPVPHRI 1012
>dbj|BAB92869.1| putative receptor protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 1013
Score = 176 bits (445), Expect = 3e-43
Identities = 88/111 (79%), Positives = 101/111 (90%), Gaps = 3/111 (2%)
Frame = -2
Query: 622 PELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHG---NVL 452
PELACQSLR+NEKCD+YGFGV+ILELVTGRR VEYG+D+V+IL D VRVLL+HG NVL
Sbjct: 894 PELACQSLRINEKCDIYGFGVLILELVTGRRAVEYGDDDVVILIDQVRVLLDHGGGSNVL 953
Query: 451 ECVDPSMSHEYPDDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPV 299
ECVDPS+ E+P++EVLPVLKL MVCTSQIPS+RP+MAEVVQILQVIK PV
Sbjct: 954 ECVDPSIG-EFPEEEVLPVLKLGMVCTSQIPSNRPSMAEVVQILQVIKAPV 1003
>dbj|BAB85306.1| P0703B11.26 [Oryza sativa (japonica cultivar-group)]
gi|19571061|dbj|BAB86487.1| P0485B12.18 [Oryza sativa
(japonica cultivar-group)]
Length = 947
Score = 140 bits (354), Expect = 1e-32
Identities = 61/114 (53%), Positives = 90/114 (78%)
Frame = -2
Query: 622 PELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECV 443
PE AC+++++ EKCDVYGFGV++LE++TGRRPVEY ED+V++L D VR LE G + +C+
Sbjct: 832 PEFACKTVKITEKCDVYGFGVLVLEVLTGRRPVEYLEDDVVVLCDLVRSALEEGRLEDCM 891
Query: 442 DPSMSHEYPDDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMDE 281
DP + E+P +E LP++KL +VCTS++PS+RP M EVV IL+++++P DE
Sbjct: 892 DPRLCGEFPMEEALPIIKLGLVCTSRVPSNRPDMGEVVNILELVRSPQDSLEDE 945
>ref|NP_195809.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g01890.1, supported by cDNA: gi_15983377
[Arabidopsis thaliana] gi|11358137|pir||T48210
hypothetical protein T20L15.160 - Arabidopsis thaliana
gi|7329662|emb|CAB82759.1| putative protein [Arabidopsis
thaliana] gi|15983378|gb|AAL11557.1|AF424563_1
AT5g01890/T20L15_160 [Arabidopsis thaliana]
gi|28416471|gb|AAO42766.1| At5g01890/T20L15_160
[Arabidopsis thaliana]
Length = 967
Score = 135 bits (340), Expect = 4e-31
Identities = 58/107 (54%), Positives = 86/107 (80%)
Frame = -2
Query: 622 PELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECV 443
PE AC+++++ ++CDVYGFG+++LE+VTG+RPVEY ED+V++L + VR LE G V ECV
Sbjct: 856 PEFACRTVKITDRCDVYGFGILVLEVVTGKRPVEYAEDDVVVLCETVREGLEEGRVEECV 915
Query: 442 DPSMSHEYPDDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTP 302
DP + +P +E +PV+KL +VC SQ+PS+RP M EVV+IL++I+ P
Sbjct: 916 DPRLRGNFPAEEAIPVIKLGLVCGSQVPSNRPEMEEVVKILELIQCP 962
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,629,985
Number of Sequences: 1393205
Number of extensions: 11610968
Number of successful extensions: 36558
Number of sequences better than 10.0: 1928
Number of HSP's better than 10.0 without gapping: 33269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35107
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
