Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001175A_C01 KMC001175A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12142 lipoxygenase (EC 1.13.11.12) 1 - fava bean gi|214342... 202 2e-51
sp|P09918|LOX3_PEA Seed lipoxygenase-3 gi|81918|pir||S01142 lipo... 170 1e-41
pir||T07036 lipoxygenase (EC 1.13.11.12) L-5 - soybean gi|123694... 165 3e-40
prf||1502333A lipoxygenase 3 163 2e-39
sp|P38417|LOX4_SOYBN Lipoxygenase-4 (L-4) (VSP94) gi|7433159|pir... 163 2e-39
>pir||T12142 lipoxygenase (EC 1.13.11.12) 1 - fava bean gi|2143422|emb|CAA97845.1|
lipoxygenase [Vicia faba]
Length = 858
Score = 202 bits (515), Expect = 2e-51
Identities = 105/131 (80%), Positives = 113/131 (86%)
Frame = -3
Query: 567 RRFMPEKGTAEYDELVTNTQKAYLRTITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE 388
RR MPEKGT EYDEL TN QKAYL+TITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE
Sbjct: 731 RRLMPEKGTTEYDELATNPQKAYLKTITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE 790
Query: 387 YWTSDANAIAAFKKFGTTLAEIEAQLTVRNNNETLRNPSWASEHALPPLLLYPTHSEEGL 208
YWTSD NA+AAFKKFG TLAEIE QL +RNNNE+LRN ++P LLYP+ SEEGL
Sbjct: 791 YWTSDTNALAAFKKFGKTLAEIEGQLILRNNNESLRNR--VGPVSMPYTLLYPS-SEEGL 847
Query: 207 TFRGIPNSVSI 175
TFRGIPNS+SI
Sbjct: 848 TFRGIPNSISI 858
>sp|P09918|LOX3_PEA Seed lipoxygenase-3 gi|81918|pir||S01142 lipoxygenase (EC 1.13.11.12)
3 [similarity] - garden pea gi|20800|emb|CAA30666.1|
lipocygenase (AA 1 - 861) [Pisum sativum]
gi|469156|emb|CAA55319.1| lipoxygenase [Pisum sativum]
Length = 861
Score = 170 bits (431), Expect = 1e-41
Identities = 92/131 (70%), Positives = 106/131 (80%)
Frame = -3
Query: 567 RRFMPEKGTAEYDELVTNTQKAYLRTITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE 388
RRFMPEKG+AE++ELV + QKAYL+TITPK QTLIDLSVIEILSRHASDE YLG+RD+
Sbjct: 735 RRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPN 794
Query: 387 YWTSDANAIAAFKKFGTTLAEIEAQLTVRNNNETLRNPSWASEHALPPLLLYPTHSEEGL 208
WTSD A+ AFKKFG LAEIE +LT RNN+E LRN E +P LLYP+ S+EGL
Sbjct: 795 -WTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVE--MPYTLLYPS-SKEGL 850
Query: 207 TFRGIPNSVSI 175
TFRGIPNS+SI
Sbjct: 851 TFRGIPNSISI 861
>pir||T07036 lipoxygenase (EC 1.13.11.12) L-5 - soybean gi|1236949|gb|AAB67732.1|
lipoxygenase L-5 [Glycine max]
Length = 853
Score = 165 bits (418), Expect = 3e-40
Identities = 84/131 (64%), Positives = 103/131 (78%)
Frame = -3
Query: 567 RRFMPEKGTAEYDELVTNTQKAYLRTITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE 388
RRFMPEKG+ EYD L N +K +L+TIT K +TLIDL++IEILSRHASDE+YLGQRD +
Sbjct: 726 RRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTIIEILSRHASDEFYLGQRDGGD 785
Query: 387 YWTSDANAIAAFKKFGTTLAEIEAQLTVRNNNETLRNPSWASEHALPPLLLYPTHSEEGL 208
YWTSDA + AFK+FG L EIE +L +NN+ETLRN ++ +P LLYP+ SEEGL
Sbjct: 786 YWTSDAGPLEAFKRFGKNLEEIEKKLIEKNNDETLRNRYGPAK--MPYTLLYPS-SEEGL 842
Query: 207 TFRGIPNSVSI 175
TFRGIPNS+SI
Sbjct: 843 TFRGIPNSISI 853
>prf||1502333A lipoxygenase 3
Length = 858
Score = 163 bits (412), Expect = 2e-39
Identities = 88/131 (67%), Positives = 104/131 (79%)
Frame = -3
Query: 567 RRFMPEKGTAEYDELVTNTQKAYLRTITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE 388
RRFMPEKG+AEY+EL N QKAYL+TITPK QTLIDLSVIEILSRHASDE YLG+RD+
Sbjct: 732 RRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPN 791
Query: 387 YWTSDANAIAAFKKFGTTLAEIEAQLTVRNNNETLRNPSWASEHALPPLLLYPTHSEEGL 208
WTSD A+ AFK+FG LA+IE +L+ RNN+E LRN + +P LL P+ S+EGL
Sbjct: 792 -WTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQ--MPYTLLLPS-SKEGL 847
Query: 207 TFRGIPNSVSI 175
TFRGIPNS+SI
Sbjct: 848 TFRGIPNSISI 858
>sp|P38417|LOX4_SOYBN Lipoxygenase-4 (L-4) (VSP94) gi|7433159|pir||T07662 lipoxygenase (EC
1.13.11.12) L-4 - soybean gi|2160320|dbj|BAA03101.1|
lipxygenase L-4 [Glycine max]
Length = 853
Score = 163 bits (412), Expect = 2e-39
Identities = 84/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 567 RRFMPEKGTAEYDELVTNTQKAYLRTITPKLQTLIDLSVIEILSRHASDEYYLGQRDSAE 388
RRFMPEKG+ EYD L N +K +L+TIT K +TLIDL+VIEILSRHASDE+YLGQRD +
Sbjct: 726 RRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGD 785
Query: 387 YWTSDANAIAAFKKFGTTLAEIEAQLTVRNNNETLRNPSWASEHALPPLLLYPTHSEEGL 208
YWTSDA + AFK+FG L EIE +L +N +ETLRN ++ +P LLYP+ SEEGL
Sbjct: 786 YWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAK--MPYTLLYPS-SEEGL 842
Query: 207 TFRGIPNSVSI 175
TFRGIPNS+SI
Sbjct: 843 TFRGIPNSISI 853
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,197,282
Number of Sequences: 1393205
Number of extensions: 10063550
Number of successful extensions: 20574
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 19824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20293
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
