Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001174A_C01 KMC001174A_c01
(761 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196552.1| 26S proteasome regulatory subunit (RPN5), putat... 125 5e-28
dbj|BAB78500.1| 26S proteasome regulatory particle non-ATPase su... 124 1e-27
gb|AAO20069.1| putative proteasome regulatory non-ATPase subunit... 124 1e-27
ref|NP_568994.1| 26S proteasome regulatory subunit (RPN5), putat... 122 6e-27
gb|AAL32985.1| AT5g64760/MVP7_9 [Arabidopsis thaliana] gi|170631... 122 6e-27
>ref|NP_196552.1| 26S proteasome regulatory subunit (RPN5), putative; protein id:
At5g09900.1, supported by cDNA: gi_14334433 [Arabidopsis
thaliana] gi|9758968|dbj|BAB09411.1| 26S proteasome p55
protein-like [Arabidopsis thaliana]
gi|14334434|gb|AAK59415.1| putative 26S proteasome p55
protein [Arabidopsis thaliana]
gi|21280811|gb|AAM44954.1| putative 26S proteasome p55
protein [Arabidopsis thaliana]
Length = 442
Score = 125 bits (315), Expect = 5e-28
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = -3
Query: 756 EKHLSDMVVSKALIAKIDRPKGIVCFPPAKDSNDILNSWAANLEKLLDLVEKSCHQIHKE 577
EKHLS+MVVSKALIAKIDRP GIVCF AKDSN+ILNSWA NLEKLLDLVEKSCHQIHKE
Sbjct: 373 EKHLSEMVVSKALIAKIDRPSGIVCFQIAKDSNEILNSWAGNLEKLLDLVEKSCHQIHKE 432
Query: 576 TMVHKAVLK 550
TMVHKA L+
Sbjct: 433 TMVHKAALR 441
>dbj|BAB78500.1| 26S proteasome regulatory particle non-ATPase subunit5 [Oryza
sativa (japonica cultivar-group)]
Length = 268
Score = 124 bits (311), Expect = 1e-27
Identities = 60/69 (86%), Positives = 64/69 (91%)
Frame = -3
Query: 756 EKHLSDMVVSKALIAKIDRPKGIVCFPPAKDSNDILNSWAANLEKLLDLVEKSCHQIHKE 577
EKHLSDMV SK+LIAKIDRP G+VCF A+DSN ILNSWAANLEKLLDLVEKSCHQIHKE
Sbjct: 199 EKHLSDMVNSKSLIAKIDRPMGVVCFRTAQDSNGILNSWAANLEKLLDLVEKSCHQIHKE 258
Query: 576 TMVHKAVLK 550
TM+HKAVLK
Sbjct: 259 TMIHKAVLK 267
>gb|AAO20069.1| putative proteasome regulatory non-ATPase subunit [Oryza sativa
(japonica cultivar-group)]
Length = 443
Score = 124 bits (311), Expect = 1e-27
Identities = 60/69 (86%), Positives = 64/69 (91%)
Frame = -3
Query: 756 EKHLSDMVVSKALIAKIDRPKGIVCFPPAKDSNDILNSWAANLEKLLDLVEKSCHQIHKE 577
EKHLSDMV SK+LIAKIDRP G+VCF A+DSN ILNSWAANLEKLLDLVEKSCHQIHKE
Sbjct: 374 EKHLSDMVNSKSLIAKIDRPMGVVCFRTAQDSNGILNSWAANLEKLLDLVEKSCHQIHKE 433
Query: 576 TMVHKAVLK 550
TM+HKAVLK
Sbjct: 434 TMIHKAVLK 442
>ref|NP_568994.1| 26S proteasome regulatory subunit (RPN5), putative; protein id:
At5g64760.1 [Arabidopsis thaliana]
Length = 442
Score = 122 bits (306), Expect = 6e-27
Identities = 58/69 (84%), Positives = 62/69 (89%)
Frame = -3
Query: 756 EKHLSDMVVSKALIAKIDRPKGIVCFPPAKDSNDILNSWAANLEKLLDLVEKSCHQIHKE 577
EKHLS+MVVSKALIAKIDRP GI+CF KDSN+ILNSWA NLEKLLDLVEKSCHQIHKE
Sbjct: 373 EKHLSEMVVSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSCHQIHKE 432
Query: 576 TMVHKAVLK 550
TMVHK L+
Sbjct: 433 TMVHKVALR 441
>gb|AAL32985.1| AT5g64760/MVP7_9 [Arabidopsis thaliana] gi|17063193|gb|AAL32972.1|
AT5g64760/MVP7_9 [Arabidopsis thaliana]
gi|21700915|gb|AAM70581.1| AT5g64760/MVP7_9 [Arabidopsis
thaliana]
Length = 442
Score = 122 bits (306), Expect = 6e-27
Identities = 58/69 (84%), Positives = 62/69 (89%)
Frame = -3
Query: 756 EKHLSDMVVSKALIAKIDRPKGIVCFPPAKDSNDILNSWAANLEKLLDLVEKSCHQIHKE 577
EKHLS+MVVSKALIAKIDRP GI+CF KDSN+ILNSWA NLEKLLDLVEKSCHQIHKE
Sbjct: 373 EKHLSEMVVSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSCHQIHKE 432
Query: 576 TMVHKAVLK 550
TMVHK L+
Sbjct: 433 TMVHKVALR 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,083,866
Number of Sequences: 1393205
Number of extensions: 14680735
Number of successful extensions: 31762
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 30753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31759
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
