Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001168A_C04 KMC001168A_c04
(773 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00119036.1| hypothetical protein [Cytophaga hutchinsonii] 42 0.010
sp|P21301|NUCM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 41 0.017
ref|NP_701630.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.5
ref|NP_595200.1| similar to S. cerevisiae chl12 protein [Schizos... 33 4.6
ref|NP_503665.1| Putative membrane protein family member, with a... 32 7.8
>ref|ZP_00119036.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 707
Score = 42.0 bits (97), Expect = 0.010
Identities = 22/58 (37%), Positives = 32/58 (54%)
Frame = +1
Query: 409 QIYMFSQMKNL*NLLFMYCYVGGLLHKSPSQMKLR*VEYIEDLHSLYWKLEVSDCYNL 582
+IY F + NL LF Y GG H P Q+ EY E + +L++ +E+SD YN+
Sbjct: 376 EIYQFDSILNLVPELFFTQYAGGRFHSCPLQLN----EYREVIPNLFFGMEISDIYNI 429
>sp|P21301|NUCM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT HOMOLOG (NADH
DEHYDROGENASE SUBUNIT 7 HOMOLOG) gi|102130|pir||A35693
NADH2 dehydrogenase (EC 1.6.99.3) chain 7 - Trypanosoma
brucei mitochondrion
Length = 386
Score = 41.2 bits (95), Expect = 0.017
Identities = 27/94 (28%), Positives = 38/94 (39%), Gaps = 7/94 (7%)
Frame = +1
Query: 106 FYIFNV*ALLI*LFCIYIIKTLTM-------CMMPSNSFVCTQKCSNVQFLMACFSFPQC 264
F++F L L+C I+T+ M C +P SF C + L+ CF C
Sbjct: 283 FFVFGFVCLFDYLYCDITIETIIMLFYSLWCCCLPGISFACVEHPKGEYCLLLCFCVGLC 342
Query: 265 HRIAARWCPDDHNFSCFSGCVTGALTWDATQQLG 366
R+ R C D + C+ G L D LG
Sbjct: 343 SRLRLR-CADFLHICLLDVCLRGFLLHDLVAVLG 375
>ref|NP_701630.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496800|gb|AAN36354.1|AE014848_30 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 771
Score = 33.5 bits (75), Expect = 3.5
Identities = 20/60 (33%), Positives = 33/60 (54%)
Frame = -1
Query: 200 KLLEGIIHIVNVLIIYMQNNQIKRAQTLKM*NDETTKMKSDHL*RNDKKIRGNRVKEKST 21
KL + ++ + L+IY NN+IK LK D K+ S H+ RN++ + + +KST
Sbjct: 531 KLQDRLLDYESKLLIYENNNEIK---ILKKNEDHLRKLLSKHIHRNEQLLNTTFLLQKST 587
>ref|NP_595200.1| similar to S. cerevisiae chl12 protein [Schizosaccharomyces pombe]
gi|11359060|pir||T50383 homolog to yeast chl12 protein
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|6522992|emb|CAB62096.1| similar to S. cerevisiae
chl12 protein [Schizosaccharomyces pombe]
Length = 960
Score = 33.1 bits (74), Expect = 4.6
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = -1
Query: 407 GNKEKKRKHKKLNAPNCCVASQVSAPVTQPLK 312
GN +KK+K KKL P C+ + + P +PL+
Sbjct: 512 GNSKKKKKFKKLCRPIICICNDLYTPALRPLR 543
>ref|NP_503665.1| Putative membrane protein family member, with at least 4
transmembrane domains, nematode specific [Caenorhabditis
elegans] gi|15487568|gb|AAD14706.2| Hypothetical protein
C13B7.4 [Caenorhabditis elegans]
Length = 244
Score = 32.3 bits (72), Expect = 7.8
Identities = 33/148 (22%), Positives = 64/148 (42%), Gaps = 14/148 (9%)
Frame = +1
Query: 22 VDFSFTLFPLIFLSFLHR*SLFIFVVSSFYIFNV*ALLI*LFCIYIIKTLTMCMMPSNSF 201
+D FT++ + F LF+ + +F+ L + + + +L+ +M S++F
Sbjct: 3 LDTIFTVYYAFYFIFSGTAQLFVLYL---IVFHSPPSLQDMRKLMMATSLSQVIMCSSAF 59
Query: 202 VCTQKCSNVQFLMACFSFPQCHRIAARWCPDDHNFSCFSGCVTGA----------LTWDA 351
+ + +QF +A SF C + + C +N SGC+ A +
Sbjct: 60 LTQVRIVPIQFSIALLSFGPCSIVGPQACLATYNLLNTSGCLVVASLLHMMYYRRRLMSS 119
Query: 352 TQQLGAFNFL--CFL--FFSLLPQIYMF 423
++L F+ CF+ FFS + I+ F
Sbjct: 120 VRRLSTQKFIGNCFVVYFFSAVVLIFSF 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,283,486
Number of Sequences: 1393205
Number of extensions: 13258611
Number of successful extensions: 28413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28387
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
