Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001166A_C01 KMC001166A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_609430.1| CG17098-PA [Drosophila melanogaster] gi|1072870... 36 0.22
dbj|BAB10381.1| emb|CAB71880.1~gene_id:MAF19.19~similar to unkno... 36 0.29
ref|NP_200927.1| putative protein; protein id: At5g61190.1 [Arab... 36 0.29
ref|NP_056296.1| DKFZP586G1122 protein [Homo sapiens] gi|1581075... 35 0.38
gb|AAH17644.1| Unknown (protein for MGC:28982) [Mus musculus] 35 0.38
>ref|NP_609430.1| CG17098-PA [Drosophila melanogaster] gi|10728706|gb|AAF52983.2|
CG17098-PA [Drosophila melanogaster]
Length = 652
Score = 36.2 bits (82), Expect = 0.22
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 465 CDICGISATSQLQMEDHIKGSKHRRRMEL 379
C++C + TS+ QM H+ G++HRRR+++
Sbjct: 525 CELCDVIITSESQMAMHLAGARHRRRVQI 553
>dbj|BAB10381.1| emb|CAB71880.1~gene_id:MAF19.19~similar to unknown protein
[Arabidopsis thaliana]
Length = 996
Score = 35.8 bits (81), Expect = 0.29
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 471 LWCDICGISATSQLQMEDHIKGSKHRRRMELTS 373
+WC +C IS S++ H G KHR+ +E S
Sbjct: 702 VWCQVCQISCNSKVAFASHTYGKKHRQNLESQS 734
>ref|NP_200927.1| putative protein; protein id: At5g61190.1 [Arabidopsis thaliana]
Length = 976
Score = 35.8 bits (81), Expect = 0.29
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 471 LWCDICGISATSQLQMEDHIKGSKHRRRMELTS 373
+WC +C IS S++ H G KHR+ +E S
Sbjct: 682 VWCQVCQISCNSKVAFASHTYGKKHRQNLESQS 714
>ref|NP_056296.1| DKFZP586G1122 protein [Homo sapiens]
gi|15810752|gb|AAL08625.1|AF304052_1 hematopoietic zinc
finger protein [Homo sapiens] gi|20988591|gb|AAH29752.1|
DKFZP586G1122 protein [Homo sapiens]
Length = 366
Score = 35.4 bits (80), Expect = 0.38
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 480 KRELWCDICGISATSQLQMEDHIKGSKHRRRMELTS 373
KR L+C +C ++ S Q+E H KG+KH+ +E S
Sbjct: 178 KRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARS 213
Score = 34.3 bits (77), Expect = 0.84
Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -2
Query: 492 LLGRKRE-LWCDICGISATSQLQMEDHIKGSKHRRRME 382
LL KR + C+IC I SQ Q E H KG++H RR++
Sbjct: 46 LLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVK 83
Score = 31.6 bits (70), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 477 RELWCDICGISATSQLQMEDHIKGSKHR 394
R C+IC + S++Q++ HI +HR
Sbjct: 239 RTFHCEICNVKVNSEVQLKQHISSRRHR 266
>gb|AAH17644.1| Unknown (protein for MGC:28982) [Mus musculus]
Length = 366
Score = 35.4 bits (80), Expect = 0.38
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 480 KRELWCDICGISATSQLQMEDHIKGSKHRRRMELTS 373
KR L+C +C ++ S Q+E H KG+KH+ +E S
Sbjct: 178 KRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARS 213
Score = 33.9 bits (76), Expect = 1.1
Identities = 17/38 (44%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -2
Query: 492 LLGRKRE-LWCDICGISATSQLQMEDHIKGSKHRRRME 382
LL KR + C++C I SQ Q E H KG++H RR++
Sbjct: 46 LLKTKRPVISCNVCQIRFNSQSQAEAHYKGNRHARRVK 83
Score = 31.6 bits (70), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 477 RELWCDICGISATSQLQMEDHIKGSKHR 394
R C+IC + S++Q++ HI +HR
Sbjct: 239 RTFHCEICNVKVNSEVQLKQHISSRRHR 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,107,900
Number of Sequences: 1393205
Number of extensions: 8898526
Number of successful extensions: 19231
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 18416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19225
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
