Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001165A_C01 KMC001165A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201094.1| permease 1 - like protein; protein id: At5g6289... 157 9e-38
gb|AAL76261.1|AF466824_1 putative permease 1 [Arabidopsis thaliana] 157 9e-38
gb|AAK59508.2| putative permease 1 [Arabidopsis thaliana] 157 9e-38
dbj|BAB08803.1| permease [Arabidopsis thaliana] 145 3e-34
ref|NP_199810.2| permease; protein id: At5g49990.1, supported by... 145 3e-34
>ref|NP_201094.1| permease 1 - like protein; protein id: At5g62890.1 [Arabidopsis
thaliana] gi|10177467|dbj|BAB10858.1| permease 1
[Arabidopsis thaliana]
gi|21326025|gb|AAM47573.1|AF466198_1 putative permease 1
[Arabidopsis thaliana]
Length = 532
Score = 157 bits (396), Expect = 9e-38
Identities = 70/80 (87%), Positives = 76/80 (94%)
Frame = -3
Query: 520 PVHTGARWFNDIVNVPFQSKAFVAGVVAYFLDNTLHKKESAIRKDRGKHWWDKYRSFKTD 341
PVHTGARWFND+VNVPF S+ FVAG VA+FLDNTLHKK+S+IRKDRGKHWWDK+RSFK D
Sbjct: 453 PVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGD 512
Query: 340 TRSEEFYSLPFNLNKYFPSV 281
TRSEEFYSLPFNLNKYFPSV
Sbjct: 513 TRSEEFYSLPFNLNKYFPSV 532
>gb|AAL76261.1|AF466824_1 putative permease 1 [Arabidopsis thaliana]
Length = 216
Score = 157 bits (396), Expect = 9e-38
Identities = 70/80 (87%), Positives = 76/80 (94%)
Frame = -3
Query: 520 PVHTGARWFNDIVNVPFQSKAFVAGVVAYFLDNTLHKKESAIRKDRGKHWWDKYRSFKTD 341
PVHTGARWFND+VNVPF S+ FVAG VA+FLDNTLHKK+S+IRKDRGKHWWDK+RSFK D
Sbjct: 137 PVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGD 196
Query: 340 TRSEEFYSLPFNLNKYFPSV 281
TRSEEFYSLPFNLNKYFPSV
Sbjct: 197 TRSEEFYSLPFNLNKYFPSV 216
>gb|AAK59508.2| putative permease 1 [Arabidopsis thaliana]
Length = 360
Score = 157 bits (396), Expect = 9e-38
Identities = 70/80 (87%), Positives = 76/80 (94%)
Frame = -3
Query: 520 PVHTGARWFNDIVNVPFQSKAFVAGVVAYFLDNTLHKKESAIRKDRGKHWWDKYRSFKTD 341
PVHTGARWFND+VNVPF S+ FVAG VA+FLDNTLHKK+S+IRKDRGKHWWDK+RSFK D
Sbjct: 281 PVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGD 340
Query: 340 TRSEEFYSLPFNLNKYFPSV 281
TRSEEFYSLPFNLNKYFPSV
Sbjct: 341 TRSEEFYSLPFNLNKYFPSV 360
>dbj|BAB08803.1| permease [Arabidopsis thaliana]
Length = 483
Score = 145 bits (366), Expect = 3e-34
Identities = 63/80 (78%), Positives = 71/80 (88%)
Frame = -3
Query: 520 PVHTGARWFNDIVNVPFQSKAFVAGVVAYFLDNTLHKKESAIRKDRGKHWWDKYRSFKTD 341
PVHTGARWFND+VNVPF SKAFV G VAY LD TLHKK+ +IRKDRGKHWWD++ +FK D
Sbjct: 404 PVHTGARWFNDMVNVPFSSKAFVGGCVAYLLDTTLHKKDGSIRKDRGKHWWDRFWTFKND 463
Query: 340 TRSEEFYSLPFNLNKYFPSV 281
R+EEFY+LPFNLNKYFPSV
Sbjct: 464 PRTEEFYALPFNLNKYFPSV 483
>ref|NP_199810.2| permease; protein id: At5g49990.1, supported by cDNA: gi_20260475
[Arabidopsis thaliana] gi|20260476|gb|AAM13136.1|
permease [Arabidopsis thaliana]
Length = 528
Score = 145 bits (366), Expect = 3e-34
Identities = 63/80 (78%), Positives = 71/80 (88%)
Frame = -3
Query: 520 PVHTGARWFNDIVNVPFQSKAFVAGVVAYFLDNTLHKKESAIRKDRGKHWWDKYRSFKTD 341
PVHTGARWFND+VNVPF SKAFV G VAY LD TLHKK+ +IRKDRGKHWWD++ +FK D
Sbjct: 449 PVHTGARWFNDMVNVPFSSKAFVGGCVAYLLDTTLHKKDGSIRKDRGKHWWDRFWTFKND 508
Query: 340 TRSEEFYSLPFNLNKYFPSV 281
R+EEFY+LPFNLNKYFPSV
Sbjct: 509 PRTEEFYALPFNLNKYFPSV 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,309,399
Number of Sequences: 1393205
Number of extensions: 9127293
Number of successful extensions: 21838
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 21138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21826
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
