Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001164A_C01 KMC001164A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172218.1| unknown protein; protein id: At1g07380.1 [Arabi... 171 7e-42
dbj|BAB09641.1| neutral ceramidase [Arabidopsis thaliana] 166 2e-40
ref|NP_200706.1| random slug protein - like; protein id: At5g589... 166 2e-40
gb|AAL09747.1| AT5g58980/k19m22_180 [Arabidopsis thaliana] 166 2e-40
ref|NP_181337.1| hypothetical protein; protein id: At2g38010.1 [... 164 5e-40
>ref|NP_172218.1| unknown protein; protein id: At1g07380.1 [Arabidopsis thaliana]
Length = 779
Score = 171 bits (432), Expect = 7e-42
Identities = 87/136 (63%), Positives = 102/136 (74%), Gaps = 2/136 (1%)
Frame = -1
Query: 553 QISLLPPVLVDGTPFGXSFGDVCSDVPQNSSFKTGD-TVTASFWSACPRNDLMTEGTFAL 377
Q+S L PV++D TP G SFGDV SDVP+N S K G+ VT F SACPRNDL+TEGTF L
Sbjct: 639 QLSFLTPVMMDTTPSGDSFGDVISDVPKNLSLKRGNGQVTVVFRSACPRNDLLTEGTFTL 698
Query: 376 VEFLQEKD-TWIPAYDDDDFCLRFKWSRPHILSTTSKATIEWRIPQGVTPVCL*NKTHFG 200
VE L++KD TW P YDDDD CLRFKWSR LS+ S+AT+EWRIP+ +P THFG
Sbjct: 699 VERLEQKDKTWTPVYDDDDLCLRFKWSRHKKLSSRSQATVEWRIPESASPGVY-RITHFG 757
Query: 199 AAKRLFRSIQHFTGSS 152
AAK+LF S+ HFTGSS
Sbjct: 758 AAKKLFGSVHHFTGSS 773
>dbj|BAB09641.1| neutral ceramidase [Arabidopsis thaliana]
Length = 705
Score = 166 bits (419), Expect = 2e-40
Identities = 87/136 (63%), Positives = 100/136 (72%), Gaps = 2/136 (1%)
Frame = -1
Query: 553 QISLLPPVLVDGTPFGXSFGDVCSDVPQNSSFKTG-DTVTASFWSACPRNDLMTEGTFAL 377
QISLL PV+ D TP G +FGDV SDVP+ S F+ G D V F SA PRNDLMTEGTFAL
Sbjct: 565 QISLLTPVVADMTPIGTAFGDVTSDVPRLSKFRKGADIVRVQFRSANPRNDLMTEGTFAL 624
Query: 376 VE-FLQEKDTWIPAYDDDDFCLRFKWSRPHILSTTSKATIEWRIPQGVTPVCL*NKTHFG 200
VE +L+ ++TW+P YDDDDFCLRFKWSRP LST S ATIEWRIP+ +P THFG
Sbjct: 625 VERWLEGRETWVPVYDDDDFCLRFKWSRPFKLSTQSTATIEWRIPETASPGVY-RITHFG 683
Query: 199 AAKRLFRSIQHFTGSS 152
+AK SI HF+GSS
Sbjct: 684 SAKTPISSIHHFSGSS 699
>ref|NP_200706.1| random slug protein - like; protein id: At5g58980.1 [Arabidopsis
thaliana]
Length = 733
Score = 166 bits (419), Expect = 2e-40
Identities = 87/136 (63%), Positives = 100/136 (72%), Gaps = 2/136 (1%)
Frame = -1
Query: 553 QISLLPPVLVDGTPFGXSFGDVCSDVPQNSSFKTG-DTVTASFWSACPRNDLMTEGTFAL 377
QISLL PV+ D TP G +FGDV SDVP+ S F+ G D V F SA PRNDLMTEGTFAL
Sbjct: 593 QISLLTPVVADMTPIGTAFGDVTSDVPRLSKFRKGADIVRVQFRSANPRNDLMTEGTFAL 652
Query: 376 VE-FLQEKDTWIPAYDDDDFCLRFKWSRPHILSTTSKATIEWRIPQGVTPVCL*NKTHFG 200
VE +L+ ++TW+P YDDDDFCLRFKWSRP LST S ATIEWRIP+ +P THFG
Sbjct: 653 VERWLEGRETWVPVYDDDDFCLRFKWSRPFKLSTQSTATIEWRIPETASPGVY-RITHFG 711
Query: 199 AAKRLFRSIQHFTGSS 152
+AK SI HF+GSS
Sbjct: 712 SAKTPISSIHHFSGSS 727
>gb|AAL09747.1| AT5g58980/k19m22_180 [Arabidopsis thaliana]
Length = 314
Score = 166 bits (419), Expect = 2e-40
Identities = 87/136 (63%), Positives = 100/136 (72%), Gaps = 2/136 (1%)
Frame = -1
Query: 553 QISLLPPVLVDGTPFGXSFGDVCSDVPQNSSFKTG-DTVTASFWSACPRNDLMTEGTFAL 377
QISLL PV+ D TP G +FGDV SDVP+ S F+ G D V F SA PRNDLMTEGTFAL
Sbjct: 174 QISLLTPVVADMTPIGTAFGDVTSDVPRLSKFRKGADIVRVQFRSANPRNDLMTEGTFAL 233
Query: 376 VE-FLQEKDTWIPAYDDDDFCLRFKWSRPHILSTTSKATIEWRIPQGVTPVCL*NKTHFG 200
VE +L+ ++TW+P YDDDDFCLRFKWSRP LST S ATIEWRIP+ +P THFG
Sbjct: 234 VERWLEGRETWVPVYDDDDFCLRFKWSRPFKLSTQSTATIEWRIPETASPGVY-RITHFG 292
Query: 199 AAKRLFRSIQHFTGSS 152
+AK SI HF+GSS
Sbjct: 293 SAKTPISSIHHFSGSS 308
>ref|NP_181337.1| hypothetical protein; protein id: At2g38010.1 [Arabidopsis
thaliana] gi|25333797|pir||H84799 hypothetical protein
At2g38010 [imported] - Arabidopsis thaliana
Length = 715
Score = 164 bits (416), Expect = 5e-40
Identities = 80/134 (59%), Positives = 97/134 (71%)
Frame = -1
Query: 553 QISLLPPVLVDGTPFGXSFGDVCSDVPQNSSFKTGDTVTASFWSACPRNDLMTEGTFALV 374
QISLL PV+VD TP G FGDV +DVP S+F+ G V A+FWS CPRNDLMTEG+FA+V
Sbjct: 577 QISLLSPVVVDSTPLGVKFGDVKADVPPKSTFRRGQQVNATFWSGCPRNDLMTEGSFAVV 636
Query: 373 EFLQEKDTWIPAYDDDDFCLRFKWSRPHILSTTSKATIEWRIPQGVTPVCL*NKTHFGAA 194
E L+E W P YDDDDF L+FKWSRP LS+ S+ATIEWR+P+ + H+GA+
Sbjct: 637 ETLREGGKWAPVYDDDDFSLKFKWSRPAKLSSESQATIEWRVPESAV-AGVYRIRHYGAS 695
Query: 193 KRLFRSIQHFTGSS 152
K LF SI F+GSS
Sbjct: 696 KSLFGSISSFSGSS 709
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,930,955
Number of Sequences: 1393205
Number of extensions: 9827469
Number of successful extensions: 21857
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21719
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
