Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001162A_C01 KMC001162A_c01
(690 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187876.1| hypothetical protein; protein id: At3g12700.1, ... 174 8e-43
dbj|BAB02414.1| chloroplast nucleoid DNA binding protein-like [A... 174 8e-43
dbj|BAB90037.1| putative chloroplast nucleoid DNA [Oryza sativa ... 154 8e-37
ref|NP_189198.1| hypothetical protein; protein id: At3g25700.1 [... 110 2e-23
emb|CAD40869.1| OSJNBa0064H22.14 [Oryza sativa (japonica cultiva... 109 4e-23
>ref|NP_187876.1| hypothetical protein; protein id: At3g12700.1, supported by cDNA:
gi_17979391 [Arabidopsis thaliana]
gi|17979392|gb|AAL49921.1| unknown protein [Arabidopsis
thaliana]
Length = 439
Score = 174 bits (442), Expect = 8e-43
Identities = 88/158 (55%), Positives = 113/158 (70%), Gaps = 2/158 (1%)
Frame = -1
Query: 690 FYGVNVVGISVGGQMLKIPSQVWDFNAQGGTIIDSGTTLTNLALPAYEQLFEALKKSLTK 511
FY +NV+GIS+G ML IPSQVWD + GGTI+DSGT+LT LA AY+Q+ L + L +
Sbjct: 283 FYAINVIGISLGYDMLDIPSQVWDATSGGGTILDSGTSLTLLADAAYKQVVTGLARYLVE 342
Query: 510 VKRV-PAGDFGGLDYCFD-AKGFDESSVPRLVFHFAGGVRFEPPVKSYIIDVAPQVKCIG 337
+KRV P G ++YCF GF+ S +P+L FH GG RFEP KSY++D AP VKC+G
Sbjct: 343 LKRVKPEGV--PIEYCFSFTSGFNVSKLPQLTFHLKGGARFEPHRKSYLVDAAPGVKCLG 400
Query: 336 VLAINGPGASVIGNIMQQNHLWEFDLAHNTVGFAPSAC 223
++ P +VIGNIMQQN+LWEFDL +T+ FAPSAC
Sbjct: 401 FVSAGTPATNVIGNIMQQNYLWEFDLMASTLSFAPSAC 438
>dbj|BAB02414.1| chloroplast nucleoid DNA binding protein-like [Arabidopsis
thaliana]
Length = 461
Score = 174 bits (442), Expect = 8e-43
Identities = 88/158 (55%), Positives = 113/158 (70%), Gaps = 2/158 (1%)
Frame = -1
Query: 690 FYGVNVVGISVGGQMLKIPSQVWDFNAQGGTIIDSGTTLTNLALPAYEQLFEALKKSLTK 511
FY +NV+GIS+G ML IPSQVWD + GGTI+DSGT+LT LA AY+Q+ L + L +
Sbjct: 305 FYAINVIGISLGYDMLDIPSQVWDATSGGGTILDSGTSLTLLADAAYKQVVTGLARYLVE 364
Query: 510 VKRV-PAGDFGGLDYCFD-AKGFDESSVPRLVFHFAGGVRFEPPVKSYIIDVAPQVKCIG 337
+KRV P G ++YCF GF+ S +P+L FH GG RFEP KSY++D AP VKC+G
Sbjct: 365 LKRVKPEGV--PIEYCFSFTSGFNVSKLPQLTFHLKGGARFEPHRKSYLVDAAPGVKCLG 422
Query: 336 VLAINGPGASVIGNIMQQNHLWEFDLAHNTVGFAPSAC 223
++ P +VIGNIMQQN+LWEFDL +T+ FAPSAC
Sbjct: 423 FVSAGTPATNVIGNIMQQNYLWEFDLMASTLSFAPSAC 460
>dbj|BAB90037.1| putative chloroplast nucleoid DNA [Oryza sativa (japonica
cultivar-group)]
Length = 484
Score = 154 bits (390), Expect = 8e-37
Identities = 82/160 (51%), Positives = 100/160 (62%), Gaps = 4/160 (2%)
Frame = -1
Query: 690 FYGVNVVGISVGGQMLKIPSQVWDFNAQGGTIIDSGTTLTNLALPAYEQLFEALKKSLTK 511
FY V V G+SV G++LKIP VWD GG I+DSGT+LT LA PAY + AL K L
Sbjct: 326 FYAVTVKGVSVAGELLKIPRAVWDVEQGGGAILDSGTSLTMLAKPAYRAVVAALSKRLAG 385
Query: 510 VKRVPAGDFGGLDYCFD---AKGFDESS-VPRLVFHFAGGVRFEPPVKSYIIDVAPQVKC 343
+ RV F DYC++ G D ++ +P L HFAG R EPP KSY+ID AP VKC
Sbjct: 386 LPRVTMDPF---DYCYNWTSPSGSDVAAPLPMLAVHFAGSARLEPPAKSYVIDAAPGVKC 442
Query: 342 IGVLAINGPGASVIGNIMQQNHLWEFDLAHNTVGFAPSAC 223
IG+ PG SVIGNI+QQ HLWE+DL + + F S C
Sbjct: 443 IGLQEGPWPGLSVIGNILQQEHLWEYDLKNRRLRFKRSRC 482
>ref|NP_189198.1| hypothetical protein; protein id: At3g25700.1 [Arabidopsis
thaliana] gi|11994761|dbj|BAB03090.1| chloroplast
nucleoid DNA binding protein-like; nucellin-like protein
[Arabidopsis thaliana]
Length = 452
Score = 110 bits (274), Expect = 2e-23
Identities = 61/163 (37%), Positives = 93/163 (56%), Gaps = 7/163 (4%)
Frame = -1
Query: 690 FYGVNVVGISVGGQMLKIPSQVW--DFNAQGGTIIDSGTTLTNLALPAYEQLFEALKKSL 517
FY V + + V G L+I +W D + GGT++DSGTTL LA PAY + A+++ +
Sbjct: 291 FYYVKLKSVFVNGAKLRIDPSIWEIDDSGNGGTVVDSGTTLAFLAEPAYRSVIAAVRRRV 350
Query: 516 TKVKRVPAGDF--GGLDYCFDAKGFD--ESSVPRLVFHFAGGVRFEPPVKSYIIDVAPQV 349
++P D G D C + G E +PRL F F+GG F PP ++Y I+ Q+
Sbjct: 351 ----KLPIADALTPGFDLCVNVSGVTKPEKILPRLKFEFSGGAVFVPPPRNYFIETEEQI 406
Query: 348 KCIGVLAINGP-GASVIGNIMQQNHLWEFDLAHNTVGFAPSAC 223
+C+ + +++ G SVIGN+MQQ L+EFD + +GF+ C
Sbjct: 407 QCLAIQSVDPKVGFSVIGNLMQQGFLFEFDRDRSRLGFSRRGC 449
>emb|CAD40869.1| OSJNBa0064H22.14 [Oryza sativa (japonica cultivar-group)]
Length = 444
Score = 109 bits (272), Expect = 4e-23
Identities = 65/164 (39%), Positives = 92/164 (55%), Gaps = 7/164 (4%)
Frame = -1
Query: 690 FYGVNVVGISVGGQMLKIPSQVWDF--NAQGGTIIDSGTTLTNLALPAYEQLFEALKKSL 517
FY V++ I+VG + +PS + + GG I+DSGT++T L + Y ALKK+
Sbjct: 285 FYYVSLKAITVGSTRISLPSSAFAVQDDGTGGVIVDSGTSITYLEVQGYR----ALKKAF 340
Query: 516 TKVKRVPAGDFGG--LDYCF--DAKGFDESSVPRLVFHFAGGVRFEPPVKSY-IIDVAPQ 352
+PA D G LD CF AKG D+ VPRLVFHF GG + P ++Y ++D
Sbjct: 341 AAQMALPAADGSGVGLDLCFRAPAKGVDQVEVPRLVFHFDGGADLDLPAENYMVLDGGSG 400
Query: 351 VKCIGVLAINGPGASVIGNIMQQNHLWEFDLAHNTVGFAPSACN 220
C+ V+ G S+IGN QQN + +D+ H+T+ FAP CN
Sbjct: 401 ALCLTVMGSRG--LSIIGNFQQQNFQFVYDVGHDTLSFAPVQCN 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,004,764
Number of Sequences: 1393205
Number of extensions: 13814491
Number of successful extensions: 36961
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 34986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36729
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
