Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001161A_C01 KMC001161A_c01
(967 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194745.1| putative villin; protein id: At4g30160.1 [Arabi... 265 6e-70
ref|NP_200542.1| villin; protein id: At5g57320.1 [Arabidopsis th... 214 1e-54
sp|O81645|VIL3_ARATH Villin 3 gi|11358922|pir||T50668 villin 3 [... 88 2e-16
ref|NP_567048.1| villin 3 fragment; protein id: At3g57410.1, sup... 87 4e-16
pir||T45819 villin 3 homolog F28O9.260 - Arabidopsis thaliana (f... 87 4e-16
>ref|NP_194745.1| putative villin; protein id: At4g30160.1 [Arabidopsis thaliana]
gi|25091517|sp|O65570|VIL4_ARATH Villin 4
gi|7488222|pir||T14076 probable villin [imported] -
Arabidopsis thaliana gi|3093294|emb|CAA73320.1| putative
villin [Arabidopsis thaliana] gi|5730126|emb|CAB52460.1|
putative villin [Arabidopsis thaliana]
gi|7269916|emb|CAB81009.1| putative villin [Arabidopsis
thaliana] gi|26449688|dbj|BAC41968.1| putative villin
[Arabidopsis thaliana] gi|29029072|gb|AAO64915.1|
At4g30160 [Arabidopsis thaliana]
Length = 974
Score = 265 bits (678), Expect = 6e-70
Identities = 147/222 (66%), Positives = 170/222 (76%), Gaps = 14/222 (6%)
Frame = -2
Query: 966 AYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAANFENPGARNLSTPPPVVRK 787
+YGGR+S VPDKSQ+ SRSMS SPDRVRVRGRSPAFNALAA FE+ ARNLSTPPPVVRK
Sbjct: 756 SYGGRAS-VPDKSQQRSRSMSFSPDRVRVRGRSPAFNALAATFESQNARNLSTPPPVVRK 814
Query: 786 LYPKSKTPDSAIL--APKSAAIAALTSSFEQPPSARETMIPRSVKVSPVTPKS-NPDKND 616
LYP+S TPDS+ APKS+AIA+ ++ FE+ P +E IP+ VK SP TP+S P+ N
Sbjct: 815 LYPRSVTPDSSKFAPAPKSSAIASRSALFEKIP-PQEPSIPKPVKASPKTPESPAPESNS 873
Query: 615 K-----------ENSASSRVESLTIEEDVKEGEAEDEEGLSFHPYERLKVSSPDPVPGID 469
K E S SSR+ESLTI+ED KEG EDEE L HPY+RLK +S DPV ID
Sbjct: 874 KEQEEKKENDKEEGSMSSRIESLTIQEDAKEG-VEDEEDLPAHPYDRLKTTSTDPVSDID 932
Query: 468 VTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNXLKMAIQLF 343
VT+RE YLSS EFKEKFGM+K+AFYKLPKWKQN KMA+QLF
Sbjct: 933 VTRREAYLSSEEFKEKFGMTKEAFYKLPKWKQNKFKMAVQLF 974
>ref|NP_200542.1| villin; protein id: At5g57320.1 [Arabidopsis thaliana]
gi|8777365|dbj|BAA96955.1| villin [Arabidopsis thaliana]
Length = 962
Score = 214 bits (546), Expect = 1e-54
Identities = 123/213 (57%), Positives = 147/213 (68%), Gaps = 5/213 (2%)
Frame = -2
Query: 966 AYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAANFENPGARNLSTPPPVV-- 793
AY RS+ VPDKSQ SRSM+ SPDR RVRGRSPAFNALAANFE RN STPPP+V
Sbjct: 756 AYSSRST-VPDKSQPRSRSMTFSPDRARVRGRSPAFNALAANFEKLNIRNQSTPPPMVSP 814
Query: 792 --RKLYPKSKTPDSAILAPKSAAIAALTSSFEQP-PSARETMIPRSVKVSPVTPKSNPDK 622
RKLYPKS PD + +APKSA IAA T+ FE+P P+++E P S S T ++ K
Sbjct: 815 MVRKLYPKSHAPDLSKIAPKSA-IAARTALFEKPTPTSQEP--PTSPSSSEATNQAEAPK 871
Query: 621 NDKENSASSRVESLTIEEDVKEGEAEDEEGLSFHPYERLKVSSPDPVPGIDVTKRETYLS 442
+ E + + S I ED KE EAE+E L PYERLK S DPV +D+T+RE YL+
Sbjct: 872 STSETNEEEAMSS--INEDSKEEEAEEESSLPTFPYERLKTDSEDPVSDVDLTRREAYLT 929
Query: 441 SAEFKEKFGMSKDAFYKLPKWKQNXLKMAIQLF 343
S EFKEKF M+K+ FYKLPKWKQN LKM++ LF
Sbjct: 930 SVEFKEKFEMTKNEFYKLPKWKQNKLKMSVNLF 962
>sp|O81645|VIL3_ARATH Villin 3 gi|11358922|pir||T50668 villin 3 [imported] - Arabidopsis
thaliana gi|3415117|gb|AAC31607.1| villin 3 [Arabidopsis
thaliana]
Length = 966
Score = 88.2 bits (217), Expect = 2e-16
Identities = 69/201 (34%), Positives = 96/201 (47%), Gaps = 8/201 (3%)
Frame = -2
Query: 921 SSRSMSVSPDRVRVRG-------RSPAFNALAANFENPGARNLSTPPPVVRKLYPKSKTP 763
SS + SP R R G R+ A AL + F + + S PP L ++
Sbjct: 772 SSSGRTSSPSRDRSNGSQGGPRQRAEALAALTSAFNSSPS---SKSPPRRSGLTSQASQR 828
Query: 762 DSAILAPKSAAIAALTSSFEQPPSARETMIPRSVKVSPVTPKSNPDKNDKENSASSRVES 583
+A+ A A S + PSA S T ++ K ++E S ++ E+
Sbjct: 829 AAAVAALSQVLTAEKKKSPDTSPSAEAKDEETSFSEVEATEEATEAKEEEEVSPAA--EA 886
Query: 582 LTIEEDVKEGEAEDEE-GLSFHPYERLKVSSPDPVPGIDVTKRETYLSSAEFKEKFGMSK 406
E K+ ++E E G++F YERL+ S PV GID +RE YLS EFK FGM K
Sbjct: 887 SAEEAKPKQDDSEVETTGVTF-TYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEK 945
Query: 405 DAFYKLPKWKQNXLKMAIQLF 343
++FYKLP WKQ+ LK LF
Sbjct: 946 ESFYKLPGWKQDLLKKKFNLF 966
>ref|NP_567048.1| villin 3 fragment; protein id: At3g57410.1, supported by cDNA:
gi_3415116 [Arabidopsis thaliana]
Length = 965
Score = 87.0 bits (214), Expect = 4e-16
Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Frame = -2
Query: 921 SSRSMSVSPDRVRVRG-------RSPAFNALAANFENPGARNLSTPPPVVRKLYPKSKTP 763
SS + SP R R G R+ A AL + F + + S PP L ++
Sbjct: 772 SSSGRTSSPSRDRSNGSQGGPRQRAEALAALTSAFNSSPS---SKSPPRRSGLTSQASQR 828
Query: 762 DSAILAPKSAAIAALTSSFEQPPSARETMIPRSVKVSPVTPKSNPDKNDKENSASSRVES 583
+A+ A A S + PSA E ++ T ++ K ++E S ++ E+
Sbjct: 829 AAAVAALSQVLTAEKKKSPDTSPSA-EAKDEKAFSEVEATEEATEAKEEEEVSPAA--EA 885
Query: 582 LTIEEDVKEGEAEDEE-GLSFHPYERLKVSSPDPVPGIDVTKRETYLSSAEFKEKFGMSK 406
E K+ ++E E G++F YERL+ S PV GID +RE YLS EFK FGM K
Sbjct: 886 SAEEAKPKQDDSEVETTGVTF-TYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEK 944
Query: 405 DAFYKLPKWKQNXLKMAIQLF 343
++FYKLP WKQ+ LK LF
Sbjct: 945 ESFYKLPGWKQDLLKKKFNLF 965
>pir||T45819 villin 3 homolog F28O9.260 - Arabidopsis thaliana (fragment)
gi|6735320|emb|CAB68147.1| villin 3 fragment
[Arabidopsis thaliana]
Length = 383
Score = 87.0 bits (214), Expect = 4e-16
Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Frame = -2
Query: 921 SSRSMSVSPDRVRVRG-------RSPAFNALAANFENPGARNLSTPPPVVRKLYPKSKTP 763
SS + SP R R G R+ A AL + F + + S PP L ++
Sbjct: 190 SSSGRTSSPSRDRSNGSQGGPRQRAEALAALTSAFNSSPS---SKSPPRRSGLTSQASQR 246
Query: 762 DSAILAPKSAAIAALTSSFEQPPSARETMIPRSVKVSPVTPKSNPDKNDKENSASSRVES 583
+A+ A A S + PSA E ++ T ++ K ++E S ++ E+
Sbjct: 247 AAAVAALSQVLTAEKKKSPDTSPSA-EAKDEKAFSEVEATEEATEAKEEEEVSPAA--EA 303
Query: 582 LTIEEDVKEGEAEDEE-GLSFHPYERLKVSSPDPVPGIDVTKRETYLSSAEFKEKFGMSK 406
E K+ ++E E G++F YERL+ S PV GID +RE YLS EFK FGM K
Sbjct: 304 SAEEAKPKQDDSEVETTGVTF-TYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEK 362
Query: 405 DAFYKLPKWKQNXLKMAIQLF 343
++FYKLP WKQ+ LK LF
Sbjct: 363 ESFYKLPGWKQDLLKKKFNLF 383
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 817,331,827
Number of Sequences: 1393205
Number of extensions: 17916664
Number of successful extensions: 64642
Number of sequences better than 10.0: 268
Number of HSP's better than 10.0 without gapping: 56904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63441
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54910356336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
