Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001160A_C01 KMC001160A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193885.1| putative protein; protein id: At4g21540.1 [Arab... 87 2e-16
gb|AAL29166.1| SD08238p [Drosophila melanogaster] 35 0.53
ref|NP_572522.2| CG32707-PA [Drosophila melanogaster] gi|7291001... 35 0.53
ref|NP_082736.1| Jedi [Mus musculus] gi|17017251|gb|AAL33583.1|A... 32 3.4
gb|AAL38571.1|AF444274_1 Jedi protein [Mus musculus] 32 3.4
>ref|NP_193885.1| putative protein; protein id: At4g21540.1 [Arabidopsis thaliana]
gi|7485713|pir||T05162 hypothetical protein F18E5.160 -
Arabidopsis thaliana gi|3080398|emb|CAA18718.1| putative
protein [Arabidopsis thaliana]
gi|7268951|emb|CAB81261.1| putative protein [Arabidopsis
thaliana]
Length = 1240
Score = 86.7 bits (213), Expect = 2e-16
Identities = 46/75 (61%), Positives = 54/75 (71%), Gaps = 10/75 (13%)
Frame = -3
Query: 519 SYADXWXLQELK----------DSVAYLHLGDEKARTIPHSVIAPLAVSASRGVACVFAE 370
S + W L++LK S+ L + +EK R +PHSVIAPLAVSASRGVACVFAE
Sbjct: 157 SSLNQWELEDLKVLLISSINIDGSIVNLEMENEKVRKVPHSVIAPLAVSASRGVACVFAE 216
Query: 369 RKRALVYILEEDEDE 325
R+RALVYILEEDEDE
Sbjct: 217 RRRALVYILEEDEDE 231
>gb|AAL29166.1| SD08238p [Drosophila melanogaster]
Length = 775
Score = 35.0 bits (79), Expect = 0.53
Identities = 20/42 (47%), Positives = 24/42 (56%)
Frame = -3
Query: 414 LAVSASRGVACVFAERKRALVYILEEDEDEASDAE*SLTGFL 289
LAVS SR VA V ++RKR + E E+E D E S FL
Sbjct: 715 LAVSGSRKVATVLSDRKRKMTIFEMEIEEEEDDTEMSQASFL 756
>ref|NP_572522.2| CG32707-PA [Drosophila melanogaster] gi|7291001|gb|AAF46439.1|
CG32707-PA [Drosophila melanogaster]
Length = 775
Score = 35.0 bits (79), Expect = 0.53
Identities = 20/42 (47%), Positives = 24/42 (56%)
Frame = -3
Query: 414 LAVSASRGVACVFAERKRALVYILEEDEDEASDAE*SLTGFL 289
LAVS SR VA V ++RKR + E E+E D E S FL
Sbjct: 715 LAVSGSRKVATVLSDRKRKMTIFEMEIEEEEDDTEMSQASFL 756
>ref|NP_082736.1| Jedi [Mus musculus] gi|17017251|gb|AAL33583.1|AF440279_1 MEGF12
[Mus musculus] gi|26343539|dbj|BAC35426.1| unnamed
protein product [Mus musculus]
Length = 1034
Score = 32.3 bits (72), Expect = 3.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 478 CGLPAPWG*ESSHHPSFCNCSIGS*CIKRSGLCIC 374
C LP P G ++ + C C G C+ +G C+C
Sbjct: 561 CHLPCPEGFWGANCSNTCTCKNGGTCVSENGNCVC 595
>gb|AAL38571.1|AF444274_1 Jedi protein [Mus musculus]
Length = 1034
Score = 32.3 bits (72), Expect = 3.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 478 CGLPAPWG*ESSHHPSFCNCSIGS*CIKRSGLCIC 374
C LP P G ++ + C C G C+ +G C+C
Sbjct: 561 CHLPCPEGFWGANCSNTCTCKNGGTCVSENGNCVC 595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,301,742
Number of Sequences: 1393205
Number of extensions: 8608103
Number of successful extensions: 19932
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19858
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
