Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001159A_C01 KMC001159A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00101377.1| hypothetical protein [Desulfitobacterium hafni... 34 1.1
gb|EAA35815.1| hypothetical protein [Neurospora crassa] 33 1.9
ref|NP_720901.1| putative ATP-dependent RNA helicase [Streptococ... 31 7.2
ref|NP_489351.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 31 9.5
gb|ZP_00106302.1| hypothetical protein [Nostoc punctiforme] 31 9.5
>gb|ZP_00101377.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 393
Score = 33.9 bits (76), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 418 NLGLLDRMVLYIDLATNKRKKFLHIFLWLRWYNYKSIAVLCQWSWKAFAS 269
+L R+ L D + +H F WL WY + VL SW+ FA+
Sbjct: 323 DLDAAQRLGLGADGGAAAHQALVHGFAWLWWYGGAGVVVLAALSWRLFAA 372
>gb|EAA35815.1| hypothetical protein [Neurospora crassa]
Length = 737
Score = 33.1 bits (74), Expect = 1.9
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 91 MMYIYVTPKNQNPIATLYDGSQLLFTKNLVRTVPSLRLSLPVSYSKKKGKKTIR*IFSYT 270
+ Y +TP++ N + +Y+G + + +R P+ RL SY+ K + R +SYT
Sbjct: 29 LKYSAMTPRHNNNVNHVYNGPDIQWEDESLRPPPAPRLFSRSSYASYASKASKRSFYSYT 88
>ref|NP_720901.1| putative ATP-dependent RNA helicase [Streptococcus mutans UA159]
gi|24376832|gb|AAN58207.1|AE014891_11 putative
ATP-dependent RNA helicase [Streptococcus mutans UA159]
Length = 447
Score = 31.2 bits (69), Expect = 7.2
Identities = 37/159 (23%), Positives = 59/159 (36%), Gaps = 2/159 (1%)
Frame = +1
Query: 40 YKKISETFVISRQNLRYMMYIYVTPKNQNPIATLYDGSQLLFTKNLVRTVPSLRLSLP-- 213
Y+ + S QN+R YI T K L + L T P + + P
Sbjct: 86 YEAAKQIAQFSEQNIRLANYIGGTDK-------------LRQVEKLKATQPQIMIGTPGR 132
Query: 214 VSYSKKKGKKTIR*IFSYTMQMLSMTIGRELL*TYSYTTVAIGKYARISFFCWLLGQYKA 393
+ K G I ++ + MT+ L T ++ K ++ F + Q
Sbjct: 133 IYDLVKSGHLDIHKAHTFVVDEADMTLDLGFLDTVDKIAASLPKDIQLLVFSATIPQKLQ 192
Query: 394 PFYQANLNF*TIEVPTNSHLVLLSIVSSSVYLPKKRDKN 510
PF + LN IE + V+ +S+ + K RDKN
Sbjct: 193 PFLKKYLNHPIIE-KIKTSTVIADTISNWLISTKGRDKN 230
>ref|NP_489351.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25534129|pir||AG2469
hypothetical protein all5311 [imported] - Nostoc sp.
(strain PCC 7120) gi|17134450|dbj|BAB77010.1|
ORF_ID:all5311~hypothetical protein [Nostoc sp. PCC
7120]
Length = 851
Score = 30.8 bits (68), Expect = 9.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 76 QNLRYMMYIYVTPKNQNPIATLYDGSQLLFTKNLVRTVPSLRLSLPVSYSKKKGKKTI 249
+N + ++++ PIA L+DG Q L K V P L+L S + K K +
Sbjct: 600 KNTKTLVFVLDGKLRNIPIAALFDGQQYLIEKYAVALSPGLQLMAAQSLEQNKIKAIV 657
>gb|ZP_00106302.1| hypothetical protein [Nostoc punctiforme]
Length = 259
Score = 30.8 bits (68), Expect = 9.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 382 DLATNKRKKFLHIFLWLRWYNYKSIAVLCQWSW 284
+L+ KR++++ F+W WY Y A++ S+
Sbjct: 225 ELSPEKRQRWIRSFIWTAWYEYAFFAIVPNTSY 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,544,901
Number of Sequences: 1393205
Number of extensions: 9372230
Number of successful extensions: 20297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20297
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
