Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001158A_C01 KMC001158A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16110.1| phosphoglucomutase-like protein [Oryza sativa (j... 68 9e-11
pir||T51457 phosphoglucomutase-like protein - Arabidopsis thalia... 64 1e-09
ref|NP_568350.1| phosphoglucomutase-like protein; protein id: At... 64 1e-09
gb|AAL23954.1|AF425243_1 cell surface immobilization antigen Ser... 33 2.5
sp|Q01974|ROR2_HUMAN Tyrosine-protein kinase transmembrane recep... 32 4.3
>dbj|BAC16110.1| phosphoglucomutase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 566
Score = 67.8 bits (164), Expect = 9e-11
Identities = 34/48 (70%), Positives = 39/48 (80%)
Frame = -1
Query: 570 LLRLSLQDPVLPLNIEAQSNDDAVKLAVAVLAAVKDFAGLDISALHTF 427
LLRLSL DPVLPLNIEA S DDA+KL +AVL AV +F LDI+AL+ F
Sbjct: 516 LLRLSLHDPVLPLNIEAPSKDDAIKLGLAVLTAVSEFPALDITALNKF 563
>pir||T51457 phosphoglucomutase-like protein - Arabidopsis thaliana
gi|9755778|emb|CAC01897.1| phosphoglucomutase-like
protein [Arabidopsis thaliana]
Length = 570
Score = 63.9 bits (154), Expect = 1e-09
Identities = 34/52 (65%), Positives = 36/52 (68%)
Frame = -1
Query: 570 LLRLSLQDPVLPLNIEAQSNDDAVKLAVAVLAAVKDFAGLDISALHTFAGSS 415
LLRLSL DPVLPLNIEAQS DDAVKL + V VK+F LD AL SS
Sbjct: 519 LLRLSLHDPVLPLNIEAQSEDDAVKLGLVVATTVKEFNALDTCALSNLTHSS 570
>ref|NP_568350.1| phosphoglucomutase-like protein; protein id: At5g17530.1, supported
by cDNA: gi_16974561 [Arabidopsis thaliana]
gi|16974562|gb|AAL31254.1| AT5g17530/K10A8_10
[Arabidopsis thaliana] gi|22136534|gb|AAM91053.1|
AT5g17530/K10A8_10 [Arabidopsis thaliana]
Length = 581
Score = 63.9 bits (154), Expect = 1e-09
Identities = 34/52 (65%), Positives = 36/52 (68%)
Frame = -1
Query: 570 LLRLSLQDPVLPLNIEAQSNDDAVKLAVAVLAAVKDFAGLDISALHTFAGSS 415
LLRLSL DPVLPLNIEAQS DDAVKL + V VK+F LD AL SS
Sbjct: 530 LLRLSLHDPVLPLNIEAQSEDDAVKLGLVVATTVKEFNALDTCALSNLTHSS 581
>gb|AAL23954.1|AF425243_1 cell surface immobilization antigen SerH6 [Tetrahymena thermophila]
Length = 421
Score = 33.1 bits (74), Expect = 2.5
Identities = 18/43 (41%), Positives = 25/43 (57%)
Frame = +2
Query: 416 DDPANVCKADMSKPAKSFTAASTATASFTASSLLCASMLRGST 544
D N C + S PAK+ T A+TA ++ ASS C + RG+T
Sbjct: 241 DSLCNACASSASPPAKT-TFANTAGSACVASSATCTAASRGTT 282
>sp|Q01974|ROR2_HUMAN Tyrosine-protein kinase transmembrane receptor ROR2 precursor
(Neurotrophic tyrosine kinase, receptor-related 2)
gi|346352|pir||B45082 neurotrophic receptor ror2
precursor - human gi|337467|gb|AAA60276.1| transmembrane
receptor
Length = 943
Score = 32.3 bits (72), Expect = 4.3
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 4/86 (4%)
Frame = +1
Query: 148 ALKMGCFNEIPSRRFPIFLFLDN*PHSLQPHGN----NTGPLLLGVHQTLRILNLELTPS 315
AL + C+NE PSRR P F + + L+ GN N+ G T + +L +P
Sbjct: 723 ALMIECWNEFPSRR-PRFKDIHS---RLRAWGNLSNYNSSAQTSGASNTTQTSSLSTSP- 777
Query: 316 CCCRVKRASWYNAKIEAKPFPVPNSI 393
V A + K +A PFP P I
Sbjct: 778 -VSNVSNARYVGPKQKAPPFPQPQFI 802
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,124,576
Number of Sequences: 1393205
Number of extensions: 10631685
Number of successful extensions: 32749
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32699
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
