Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001157A_C01 KMC001157A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32607.1| Unknown protein [Arabidopsis thaliana] gi|2319784... 36 0.55
ref|NP_197402.1| MAP kinase -like protein; protein id: At5g19010... 36 0.55
gb|AAK55935.1|AF268053_2 RNA polymerase beta-prime subunit [Cand... 33 2.7
>gb|AAL32607.1| Unknown protein [Arabidopsis thaliana] gi|23197840|gb|AAN15447.1|
Unknown protein [Arabidopsis thaliana]
Length = 567
Score = 35.8 bits (81), Expect = 0.55
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 669 YPKRNPSCIYERAED----GIEGSNGLQPKPQYIAQKVVAAAQGGAGGNWH 529
YPKR C R ++ EG + L+P QYI QK V+AAQ A W+
Sbjct: 518 YPKRTQPCKSNRGDEDCATAAEGPSRLKPNTQYIPQK-VSAAQDTAMSRWY 567
>ref|NP_197402.1| MAP kinase -like protein; protein id: At5g19010.1, supported by
cDNA: gi_17064905 [Arabidopsis thaliana]
Length = 567
Score = 35.8 bits (81), Expect = 0.55
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 669 YPKRNPSCIYERAED----GIEGSNGLQPKPQYIAQKVVAAAQGGAGGNWH 529
YPKR C R ++ EG + L+P QYI QK V+AAQ A W+
Sbjct: 518 YPKRTQPCKSNRGDEDCATAAEGPSRLKPNTQYIPQK-VSAAQDTAMSRWY 567
>gb|AAK55935.1|AF268053_2 RNA polymerase beta-prime subunit [Candidatus Carsonella ruddii]
Length = 842
Score = 33.5 bits (75), Expect = 2.7
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 5/63 (7%)
Frame = -2
Query: 217 VNY*YCLHFWAA*H*CCNFTTCSCNQNNRLFHCNVSLD--*IFYFLSCFTCMHI---ISD 53
+N +CL+ ++ CC TC CN+NN+ + S + + + C+ +HI S+
Sbjct: 42 INGLFCLNIFSEYKICCEKKTCKCNKNNKFINLKRSHNEYRLAHIALCYPILHIWFLKSN 101
Query: 52 VFS 44
+FS
Sbjct: 102 IFS 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,921,382
Number of Sequences: 1393205
Number of extensions: 11045881
Number of successful extensions: 29010
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28976
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
