Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001156A_C02 KMC001156A_c02
(760 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_239679.1| hypothetical protein XP_239679 [Rattus norvegicus] 36 0.52
ref|NP_187937.1| unknown protein; protein id: At3g13290.1 [Arabi... 33 3.4
dbj|BAB02798.1| gene_id:MDC11.12~pir||I52882~similar to unknown ... 33 3.4
dbj|BAB02799.1| gb|AAF53066.1~gene_id:MDC11.13~similar to unknow... 32 9.9
gb|AAM91544.1| unknown protein [Arabidopsis thaliana] 32 9.9
>ref|XP_239679.1| hypothetical protein XP_239679 [Rattus norvegicus]
Length = 534
Score = 36.2 bits (82), Expect = 0.52
Identities = 31/86 (36%), Positives = 43/86 (49%)
Frame = +3
Query: 375 KLDQGLSCSLEIHVTMLTSSFEYVTLFLVPQMKAISLTAKIKTEEGDGRSETISHKTVVL 554
KLD S + + T + Y L L+PQ AI ++A I DG+ E S++T +L
Sbjct: 248 KLDSEESVLSSVWILQETDNHLYHAL-LLPQCSAIPVSADIYLPFTDGQMEAPSNRTTLL 306
Query: 555 RQAGK*ME*FTPSPPDCLEIRSFTAL 632
A E F P PP L+I SF+ L
Sbjct: 307 SYAEN--EAF-PHPPSGLQIPSFSPL 329
>ref|NP_187937.1| unknown protein; protein id: At3g13290.1 [Arabidopsis thaliana]
Length = 1322
Score = 33.5 bits (75), Expect = 3.4
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -3
Query: 758 PPSVASTIRLLMHVVDSILLSCK 690
P S S +RL+MHV++S+L+SCK
Sbjct: 1300 PGSDVSAVRLIMHVINSLLMSCK 1322
>dbj|BAB02798.1| gene_id:MDC11.12~pir||I52882~similar to unknown protein [Arabidopsis
thaliana]
Length = 1340
Score = 33.5 bits (75), Expect = 3.4
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -3
Query: 758 PPSVASTIRLLMHVVDSILLSCK 690
P S S +RL+MHV++S+L+SCK
Sbjct: 1318 PGSDVSAVRLIMHVINSLLMSCK 1340
>dbj|BAB02799.1| gb|AAF53066.1~gene_id:MDC11.13~similar to unknown protein
[Arabidopsis thaliana]
Length = 1344
Score = 32.0 bits (71), Expect = 9.9
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 758 PPSVASTIRLLMHVVDSILLSCK 690
P S S IRL+MHV++S+L+ CK
Sbjct: 1322 PGSDVSAIRLIMHVINSMLMGCK 1344
>gb|AAM91544.1| unknown protein [Arabidopsis thaliana]
Length = 1344
Score = 32.0 bits (71), Expect = 9.9
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 758 PPSVASTIRLLMHVVDSILLSCK 690
P S S IRL+MHV++S+L+ CK
Sbjct: 1322 PGSDVSAIRLIMHVINSMLMGCK 1344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,233,236
Number of Sequences: 1393205
Number of extensions: 12213534
Number of successful extensions: 23032
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23030
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
