Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001152A_C01 KMC001152A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M291|S24C_ARATH Protein transport protein Sec24-like CEF gi... 90 1e-17
pir||T47424 hypothetical protein T22K7.20 - Arabidopsis thaliana... 90 1e-17
ref|NP_566869.1| putative protein; protein id: At3g44340.1, supp... 90 1e-17
sp|P53992|S24C_HUMAN Protein transport protein Sec24C (SEC24-rel... 55 3e-07
dbj|BAC65481.1| mKIAA0079 protein [Mus musculus] 54 6e-07
>sp|Q9M291|S24C_ARATH Protein transport protein Sec24-like CEF gi|11229586|emb|CAC16574.1|
cef protein [Arabidopsis thaliana]
Length = 1097
Score = 89.7 bits (221), Expect = 1e-17
Identities = 43/66 (65%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Frame = -1
Query: 461 LSKKLNEVINEIRRPRCSYLRLKLSRKGDPSG-MLFFSYIVEDQSAGGFSYVEFLIHVHS 285
LSKK N+V+NEIRR R SYLR+KL +KGDP+G MLF SY+VED+ +GG SYV+FL+ VH
Sbjct: 1031 LSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHR 1090
Query: 284 KIQNKM 267
+IQ+K+
Sbjct: 1091 QIQHKL 1096
>pir||T47424 hypothetical protein T22K7.20 - Arabidopsis thaliana
gi|7529768|emb|CAB86912.1| putative protein [Arabidopsis
thaliana]
Length = 1122
Score = 89.7 bits (221), Expect = 1e-17
Identities = 43/66 (65%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Frame = -1
Query: 461 LSKKLNEVINEIRRPRCSYLRLKLSRKGDPSG-MLFFSYIVEDQSAGGFSYVEFLIHVHS 285
LSKK N+V+NEIRR R SYLR+KL +KGDP+G MLF SY+VED+ +GG SYV+FL+ VH
Sbjct: 1056 LSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHR 1115
Query: 284 KIQNKM 267
+IQ+K+
Sbjct: 1116 QIQHKL 1121
>ref|NP_566869.1| putative protein; protein id: At3g44340.1, supported by cDNA:
gi_11229585 [Arabidopsis thaliana]
Length = 1096
Score = 89.7 bits (221), Expect = 1e-17
Identities = 43/66 (65%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Frame = -1
Query: 461 LSKKLNEVINEIRRPRCSYLRLKLSRKGDPSG-MLFFSYIVEDQSAGGFSYVEFLIHVHS 285
LSKK N+V+NEIRR R SYLR+KL +KGDP+G MLF SY+VED+ +GG SYV+FL+ VH
Sbjct: 1030 LSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHR 1089
Query: 284 KIQNKM 267
+IQ+K+
Sbjct: 1090 QIQHKL 1095
>sp|P53992|S24C_HUMAN Protein transport protein Sec24C (SEC24-related protein C)
gi|17511944|gb|AAH18928.1|AAH18928 SEC24 (S. cerevisiae)
related gene family, member C [Homo sapiens]
Length = 1094
Score = 55.5 bits (132), Expect = 3e-07
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 461 LSKKLNEVINEIRRPRCSYLRLKLSRKGDPSGMLFFSYIVEDQS-AGGFSYVEFLIHVHS 285
LSKK+ +I+ +R R Y++L + ++ D MLF ++VED+S +GG SYV+FL H+H
Sbjct: 1028 LSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHK 1087
Query: 284 KIQNKMA 264
+I+ ++
Sbjct: 1088 EIRQLLS 1094
>dbj|BAC65481.1| mKIAA0079 protein [Mus musculus]
Length = 1028
Score = 54.3 bits (129), Expect = 6e-07
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 461 LSKKLNEVINEIRRPRCSYLRLKLSRKGDPSGMLFFSYIVEDQS-AGGFSYVEFLIHVHS 285
LSKK+ +I+ +R R Y++L + ++ D MLF ++VED+S +GG SYV+FL H+H
Sbjct: 962 LSKKVRGLIDSLRAQRMRYMKLIVVKQEDKLEMLFKHFLVEDKSLSGGASYVDFLCHMHK 1021
Query: 284 KIQNKMA 264
+I+ ++
Sbjct: 1022 EIRQLLS 1028
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,553,785
Number of Sequences: 1393205
Number of extensions: 8224564
Number of successful extensions: 19589
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 19300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19572
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
