Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001151A_C01 KMC001151A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC00346.1| Hypothetical protein [Corynebacterium glutamicum... 33 1.5
ref|NP_701446.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.5
ref|NP_602138.1| hypothetical protein [Corynebacterium glutamicu... 33 2.5
ref|NP_705395.1| phosphatidylinositol transfer protein, putative... 32 4.3
dbj|BAC53937.1| hypothetical protein [Nicotiana tabacum] 32 5.6
>dbj|BAC00346.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 356
Score = 33.5 bits (75), Expect = 1.5
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -1
Query: 362 DFMPRHNILGDISL---LLTYMLILTVII*VMVFWLVM*FWPMVYRS 231
D+ H + GD++ Y++++T I+ V++FW+V+ +W + R+
Sbjct: 40 DYNMVHMVFGDMNTDRAAQAYIIVITTIVMVVLFWIVLSYWSLADRA 86
>ref|NP_701446.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496613|gb|AAN36170.1|AE014845_25 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4440
Score = 32.7 bits (73), Expect = 2.5
Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 202 KYLKLN*KQIDLY---TIGQNYITSQKTITHIITVKINIYVSNKEISPRILCLGIKSKQI 372
KYL++ K +D++ T NY S+ + HII + I + NK IS +++ QI
Sbjct: 2265 KYLQIFKKNVDIFLEKTNNLNY-NSKIVLKHIIKIPIKTQLKNKNISTNNYYSFLQTAQI 2323
Query: 373 FFYLSL 390
F+ L++
Sbjct: 2324 FYGLNI 2329
>ref|NP_602138.1| hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 314
Score = 32.7 bits (73), Expect = 2.5
Identities = 12/42 (28%), Positives = 27/42 (63%), Gaps = 3/42 (7%)
Frame = -1
Query: 347 HNILGDISL---LLTYMLILTVII*VMVFWLVM*FWPMVYRS 231
H + GD++ Y++++T I+ V++FW+V+ +W + R+
Sbjct: 3 HMVFGDMNTDRAAQAYIIVITTIVMVVLFWIVLSYWSLADRA 44
>ref|NP_705395.1| phosphatidylinositol transfer protein, putative [Plasmodium
falciparum 3D7] gi|23615640|emb|CAD52632.1|
phosphatidylinositol transfer protein, putative
[Plasmodium falciparum 3D7]
Length = 1856
Score = 32.0 bits (71), Expect = 4.3
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -2
Query: 253 FGLWYIGLFVFSLV*GTLFCICVKYLFVNNQS*FSHVMLCWFSMP 119
F ++++ F+ FCIC+ Y++++N +H+ C ++P
Sbjct: 1095 FKIYFLSFFLL------FFCICIIYIYISNHKPINHMYKCSLNIP 1133
>dbj|BAC53937.1| hypothetical protein [Nicotiana tabacum]
Length = 573
Score = 31.6 bits (70), Expect = 5.6
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -1
Query: 335 GDISLLLTYMLILTVII*VMVFWLVM*FWPMV 240
GD+S+L YM+ ++++I +V W +M WPM+
Sbjct: 167 GDLSVLCPYMVNVSLLIGAIVSWAIM--WPMI 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,459,710
Number of Sequences: 1393205
Number of extensions: 8122890
Number of successful extensions: 15040
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14991
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
