Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001150A_C01 KMC001150A_c01
(781 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO37540.1| unknown protein [Oryza sativa (japonica cultivar-... 277 1e-73
ref|NP_171887.1| hypothetical protein; protein id: At1g03910.1 [... 276 3e-73
gb|AAH19848.1|AAH19848 Similar to cactin [Homo sapiens] 213 2e-54
gb|AAH04262.1|AAH04262 Similar to cactin [Homo sapiens] 213 2e-54
pir||T02672 hypothetical protein R31449_3 - human (fragment) gi|... 213 2e-54
>gb|AAO37540.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 672
Score = 277 bits (708), Expect = 1e-73
Identities = 119/126 (94%), Positives = 124/126 (97%)
Frame = +3
Query: 15 WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAP 194
WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDK KAP
Sbjct: 547 WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKSKAP 606
Query: 195 TYSIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFK 374
TY+I+KDGS GETC+IRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILH+YFNFK
Sbjct: 607 TYTIEKDGSTGETCLIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHLYFNFK 666
Query: 375 RHRYRR 392
R+RYRR
Sbjct: 667 RYRYRR 672
>ref|NP_171887.1| hypothetical protein; protein id: At1g03910.1 [Arabidopsis
thaliana] gi|25406750|pir||H86169 hypothetical protein
[imported] - Arabidopsis thaliana
gi|4204304|gb|AAD10685.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 672
Score = 276 bits (705), Expect = 3e-73
Identities = 118/126 (93%), Positives = 124/126 (97%)
Frame = +3
Query: 15 WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAP 194
WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAP
Sbjct: 547 WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAP 606
Query: 195 TYSIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFK 374
Y+I+KDG++ ETC+IRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILH+YFNFK
Sbjct: 607 IYTIEKDGTSAETCMIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHLYFNFK 666
Query: 375 RHRYRR 392
RHRYRR
Sbjct: 667 RHRYRR 672
>gb|AAH19848.1|AAH19848 Similar to cactin [Homo sapiens]
Length = 290
Score = 213 bits (542), Expect = 2e-54
Identities = 89/125 (71%), Positives = 105/125 (83%)
Frame = +3
Query: 18 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPT 197
W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPDL+DK P
Sbjct: 166 WADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPE 225
Query: 198 YSIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKR 377
Y ++ N + I+RFHAGPPYEDIAF+IVN+EWEYSH+ GF+C F GI ++F+FKR
Sbjct: 226 YFLEACADNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFKR 285
Query: 378 HRYRR 392
+RYRR
Sbjct: 286 YRYRR 290
>gb|AAH04262.1|AAH04262 Similar to cactin [Homo sapiens]
Length = 183
Score = 213 bits (542), Expect = 2e-54
Identities = 89/125 (71%), Positives = 105/125 (83%)
Frame = +3
Query: 18 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPT 197
W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPDL+DK P
Sbjct: 59 WADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPE 118
Query: 198 YSIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKR 377
Y ++ N + I+RFHAGPPYEDIAF+IVN+EWEYSH+ GF+C F GI ++F+FKR
Sbjct: 119 YFLEACADNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFKR 178
Query: 378 HRYRR 392
+RYRR
Sbjct: 179 YRYRR 183
>pir||T02672 hypothetical protein R31449_3 - human (fragment)
gi|3253120|gb|AAC24305.1| R31449_3 [Homo sapiens]
Length = 813
Score = 213 bits (542), Expect = 2e-54
Identities = 89/125 (71%), Positives = 105/125 (83%)
Frame = +3
Query: 18 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPT 197
W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPDL+DK P
Sbjct: 512 WADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPE 571
Query: 198 YSIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKR 377
Y ++ N + I+RFHAGPPYEDIAF+IVN+EWEYSH+ GF+C F GI ++F+FKR
Sbjct: 572 YFLEACADNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFKR 631
Query: 378 HRYRR 392
+RYRR
Sbjct: 632 YRYRR 636
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,300,495
Number of Sequences: 1393205
Number of extensions: 14125952
Number of successful extensions: 33499
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 32185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33463
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
