Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001147A_C01 KMC001147A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T30828 RNA-directed RNA polymerase - common tobacco gi|4138... 160 2e-38
pir||T30819 RNA-directed RNA polymerase (EC 2.7.7.48) - tomato g... 155 4e-37
ref|NP_172932.1| RNA-dependent RNA polymerase, putative; protein... 152 6e-36
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 152 6e-36
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] 150 2e-35
>pir||T30828 RNA-directed RNA polymerase - common tobacco
gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase
[Nicotiana tabacum]
Length = 1116
Score = 160 bits (404), Expect = 2e-38
Identities = 75/106 (70%), Positives = 86/106 (80%)
Frame = -2
Query: 696 MDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAY 517
MDYYGIKTEAEILSG IMK SK+F +R+DAEAI +AVR LRKEAR WF S DD
Sbjct: 990 MDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRRSDI--DDML 1047
Query: 516 AKASAWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 379
AKASAWY+VTYHH+YWG Y+EG+ RDH++SFPWCVY L+QIKK K
Sbjct: 1048 AKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAK 1093
>pir||T30819 RNA-directed RNA polymerase (EC 2.7.7.48) - tomato
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Lycopersicon esculentum]
Length = 1114
Score = 155 bits (393), Expect = 4e-37
Identities = 71/106 (66%), Positives = 87/106 (81%)
Frame = -2
Query: 696 MDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAY 517
MDYYGIKTEAEILSG IMK SK+F +R+DAEAI++AVR+LRKEAR WF + DD
Sbjct: 988 MDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDI--DDML 1045
Query: 516 AKASAWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 379
KASAWY+VTYH +YWGCY++G+ R H++SFPWCVY L+QIKK+K
Sbjct: 1046 PKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDK 1091
>ref|NP_172932.1| RNA-dependent RNA polymerase, putative; protein id: At1g14790.1
[Arabidopsis thaliana]
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana]
Length = 1107
Score = 152 bits (383), Expect = 6e-36
Identities = 74/113 (65%), Positives = 88/113 (77%)
Frame = -2
Query: 696 MDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAY 517
MDYYGIKTEAEILSG IM+MSKSFTKRRDAE+I AVR+LRKE + FN S + A
Sbjct: 984 MDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESA- 1042
Query: 516 AKASAWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRKK 358
KASAWY+VTYH SYWG Y+EG+NRDH+LSF WCVY LV+IKK + +++
Sbjct: 1043 -KASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQ 1094
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 152 bits (383), Expect = 6e-36
Identities = 74/113 (65%), Positives = 88/113 (77%)
Frame = -2
Query: 696 MDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAY 517
MDYYGIKTEAEILSG IM+MSKSFTKRRDAE+I AVR+LRKE + FN S + A
Sbjct: 984 MDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESA- 1042
Query: 516 AKASAWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRKK 358
KASAWY+VTYH SYWG Y+EG+NRDH+LSF WCVY LV+IKK + +++
Sbjct: 1043 -KASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQ 1094
>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 150 bits (379), Expect = 2e-35
Identities = 70/96 (72%), Positives = 79/96 (81%)
Frame = -2
Query: 696 MDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAY 517
MDYYGIKTEAE LSG IMK SK+F +RRDAEAI +AVRSLRKEARTWF S DD
Sbjct: 681 MDYYGIKTEAETLSGGIMKASKTFDRRRDAEAIGVAVRSLRKEARTWFKRRS--DIDDLL 738
Query: 516 AKASAWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVY 409
AKASAWY+V YH +YWGCY+EG+ RDH++SFPWCVY
Sbjct: 739 AKASAWYHVAYHPTYWGCYNEGLKRDHFISFPWCVY 774
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,885,450
Number of Sequences: 1393205
Number of extensions: 14575116
Number of successful extensions: 64043
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 49584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57533
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
