Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001142A_C01 KMC001142A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201260.1| putative protein; protein id: At5g64550.1, supp... 50 1e-05
dbj|BAC24904.1| OJ1484_G09.17 [Oryza sativa (japonica cultivar-g... 32 5.4
gb|AAH34628.1| cell recognition protein CASPR4 [Mus musculus] 31 7.1
ref|NP_569724.1| contactin associated protein 4; cell recognitio... 31 7.1
dbj|BAC35446.1| unnamed protein product [Mus musculus] 31 7.1
>ref|NP_201260.1| putative protein; protein id: At5g64550.1, supported by cDNA:
gi_20259337 [Arabidopsis thaliana]
gi|10178058|dbj|BAB11422.1|
emb|CAB89363.1~gene_id:MUB3.7~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|20259338|gb|AAM13994.1| unknown protein [Arabidopsis
thaliana] gi|23296960|gb|AAN13211.1| unknown protein
[Arabidopsis thaliana]
Length = 634
Score = 50.1 bits (118), Expect = 1e-05
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = -3
Query: 502 SMKSPSYSNFFTAKKPEQDRNSHSTAAGSSGAGSSYRKSLDFSLPEGRVHGGDLMTFFGG 323
SMKS S+SN ++P+ + N++S+ GS+ R DF +PE RVHGG LM+ G
Sbjct: 578 SMKSLSFSN---TERPDIETNNNSS-------GSNGRNIFDFMIPEERVHGGGLMSLLNG 627
Query: 322 NLKNAL 305
N+K L
Sbjct: 628 NMKQTL 633
>dbj|BAC24904.1| OJ1484_G09.17 [Oryza sativa (japonica cultivar-group)]
Length = 720
Score = 31.6 bits (70), Expect = 5.4
Identities = 18/47 (38%), Positives = 24/47 (50%)
Frame = -1
Query: 480 QTSSQPRSQSKTGTATALRPAPAAPVAVIGKASTSVCRRAGSTVATS 340
Q+ R+ S T + TA P+PA P + K STSV + ATS
Sbjct: 536 QSPVSARTSSATPSPTARTPSPAPPSPIATKTSTSVVLSLAAVRATS 582
>gb|AAH34628.1| cell recognition protein CASPR4 [Mus musculus]
Length = 1310
Score = 31.2 bits (69), Expect = 7.1
Identities = 26/79 (32%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Frame = -1
Query: 432 ALRPAPAAPVAVIGKASTSVCRRAGSTVATS*RFSEEI*KTHSTVSETRGCLN---S*DS 262
AL+P P APV V G + S C T ATS R HS + R L DS
Sbjct: 1184 ALQPGPPAPVTVTGHVTESSCVAPSGTDATS-RERTHSFADHSGTMDDREPLTHAIKSDS 1242
Query: 261 KLVDSF*KIGIISFMELCI 205
++ I ++ F+ LC+
Sbjct: 1243 AVIGGL--IAVVIFILLCV 1259
>ref|NP_569724.1| contactin associated protein 4; cell recognition protein CASPR4 [Mus
musculus] gi|17433034|sp|Q99P47|CTA4_MOUSE Contactin
associated protein-like 4 precursor (Cell recognition
molecule Caspr4) gi|12330704|gb|AAG52890.1|AF333770_1
cell recognition molecule CASPR4 [Mus musculus]
Length = 1310
Score = 31.2 bits (69), Expect = 7.1
Identities = 26/79 (32%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Frame = -1
Query: 432 ALRPAPAAPVAVIGKASTSVCRRAGSTVATS*RFSEEI*KTHSTVSETRGCLN---S*DS 262
AL+P P APV V G + S C T ATS R HS + R L DS
Sbjct: 1184 ALQPGPPAPVTVTGHVTESSCVAPSGTDATS-RERTHSFADHSGTMDDREPLTHAIKSDS 1242
Query: 261 KLVDSF*KIGIISFMELCI 205
++ I ++ F+ LC+
Sbjct: 1243 AVIGGL--IAVVIFILLCV 1259
>dbj|BAC35446.1| unnamed protein product [Mus musculus]
Length = 1180
Score = 31.2 bits (69), Expect = 7.1
Identities = 26/79 (32%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Frame = -1
Query: 432 ALRPAPAAPVAVIGKASTSVCRRAGSTVATS*RFSEEI*KTHSTVSETRGCLN---S*DS 262
AL+P P APV V G + S C T ATS R HS + R L DS
Sbjct: 1054 ALQPGPPAPVTVTGHVTESSCVAPSGTDATS-RERTHSFADHSGTMDDREPLTHAIKSDS 1112
Query: 261 KLVDSF*KIGIISFMELCI 205
++ I ++ F+ LC+
Sbjct: 1113 AVIGGL--IAVVIFILLCV 1129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,445,051
Number of Sequences: 1393205
Number of extensions: 8635900
Number of successful extensions: 27805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27728
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
