Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001136A_C01 KMC001136A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T48302 hypothetical protein F9G14.120 - Arabidopsis thalian... 106 1e-22
ref|NP_568107.1| putative protein; protein id: At5g02810.1, supp... 106 1e-22
gb|AAN64489.1| putative pseudo-response regulator [Oryza sativa ... 93 2e-18
gb|AAO27295.1| timing of CAB expression 1-like protein [Brassica... 75 6e-13
dbj|BAB08930.1| contains similarity to two-component response re... 74 1e-12
>pir||T48302 hypothetical protein F9G14.120 - Arabidopsis thaliana
gi|7413556|emb|CAB86035.1| putative protein [Arabidopsis
thaliana]
Length = 720
Score = 106 bits (265), Expect = 1e-22
Identities = 57/84 (67%), Positives = 64/84 (75%), Gaps = 3/84 (3%)
Frame = -3
Query: 508 NVGSHNGLTGNSX---SGDASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKV 338
N+GS NG N SG SGSGS N D+NK SQR+AALTKFRQKRKER CF KKV
Sbjct: 626 NMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKER---CFRKKV 682
Query: 337 RYQSRKRLAEQRPRFRGQFVRQSS 266
RYQSRK+LAEQRPR RGQFVR+++
Sbjct: 683 RYQSRKKLAEQRPRVRGQFVRKTA 706
>ref|NP_568107.1| putative protein; protein id: At5g02810.1, supported by cDNA:
gi_10281003, supported by cDNA: gi_14532637 [Arabidopsis
thaliana] gi|10281004|dbj|BAB13742.1| pseudo-response
regulator 7 [Arabidopsis thaliana]
gi|14532638|gb|AAK64047.1| unknown protein [Arabidopsis
thaliana] gi|23296600|gb|AAN13129.1| unknown protein
[Arabidopsis thaliana]
Length = 727
Score = 106 bits (265), Expect = 1e-22
Identities = 57/84 (67%), Positives = 64/84 (75%), Gaps = 3/84 (3%)
Frame = -3
Query: 508 NVGSHNGLTGNSX---SGDASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKV 338
N+GS NG N SG SGSGS N D+NK SQR+AALTKFRQKRKER CF KKV
Sbjct: 633 NMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKER---CFRKKV 689
Query: 337 RYQSRKRLAEQRPRFRGQFVRQSS 266
RYQSRK+LAEQRPR RGQFVR+++
Sbjct: 690 RYQSRKKLAEQRPRVRGQFVRKTA 713
>gb|AAN64489.1| putative pseudo-response regulator [Oryza sativa (japonica
cultivar-group)]
Length = 789
Score = 92.8 bits (229), Expect = 2e-18
Identities = 52/89 (58%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Frame = -3
Query: 508 NVGSHNGLTGNSXSG--DASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKVR 335
N+ + NG+ + +G + SGSGS N + QN R+AAL KFRQKRK R F KKVR
Sbjct: 699 NMETVNGIVDENGAGGGNGSGSGSGNDLYQNGVCYREAALNKFRQKRKVRN---FGKKVR 755
Query: 334 YQSRKRLAEQRPRFRGQFVRQSSNENASG 248
YQSRKRLAEQRPR RGQFVRQS E+ +G
Sbjct: 756 YQSRKRLAEQRPRIRGQFVRQSGQEDQAG 784
>gb|AAO27295.1| timing of CAB expression 1-like protein [Brassica rapa subsp.
pekinensis]
Length = 104
Score = 74.7 bits (182), Expect = 6e-13
Identities = 40/70 (57%), Positives = 49/70 (69%)
Frame = -3
Query: 460 ASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKVRYQSRKRLAEQRPRFRGQF 281
++ S S R Q+ QR+AAL KFR KRK+R CF KKVRY+SRK+LAEQRPR +GQF
Sbjct: 34 SANSSSVGRTQQSL--QREAALNKFRMKRKDR---CFDKKVRYESRKKLAEQRPRIKGQF 88
Query: 280 VRQSSNENAS 251
VRQ + S
Sbjct: 89 VRQVQSTETS 98
>dbj|BAB08930.1| contains similarity to two-component response regulator
protein~gene_id:T31K7.5 [Arabidopsis thaliana]
gi|17063183|gb|AAL32986.1| pseudo-response regulator 5
protein [Arabidopsis thaliana]
gi|23506027|gb|AAN28873.1| At5g24470/T31K7_5
[Arabidopsis thaliana]
Length = 558
Score = 73.6 bits (179), Expect = 1e-12
Identities = 36/53 (67%), Positives = 43/53 (80%)
Frame = -3
Query: 412 QRQAALTKFRQKRKEREERCFHKKVRYQSRKRLAEQRPRFRGQFVRQSSNENA 254
QR+AALTKFR KRK+R C+ KKVRY+SRK+LAEQRPR +GQFVRQ + A
Sbjct: 508 QREAALTKFRMKRKDR---CYEKKVRYESRKKLAEQRPRIKGQFVRQVQSTQA 557
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,374,906
Number of Sequences: 1393205
Number of extensions: 7671339
Number of successful extensions: 29330
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 23717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27979
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
