Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001134A_C01 KMC001134A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197965.1| receptor-like protein kinase - like; protein id... 56 4e-07
dbj|BAB91929.1| putative receptor-like kinase [Oryza sativa (jap... 50 3e-05
gb|AAC36318.1| leucine-rich receptor-like protein kinase [Malus ... 45 6e-04
gb|AAM77879.1|AF509746_1 receptor-like kinase [Hordeum vulgare s... 42 0.007
gb|AAM77877.1|AF509744_1 receptor-like kinase [Hordeum vulgare s... 42 0.007
>ref|NP_197965.1| receptor-like protein kinase - like; protein id: At5g25930.1
[Arabidopsis thaliana]
gi|5107831|gb|AAD40144.1|AF149413_25 contains similarity
to protein kinase domains (Pfam F00069, Score=162.6,
E=6.8e-45, N=1) and leucien rich repeats (Pfam PF00560,
Score=210.7, E=2.2e-59, N=10) [Arabidopsis thaliana]
gi|28393326|gb|AAO42089.1| putative receptor protein
kinase [Arabidopsis thaliana]
Length = 1005
Score = 56.2 bits (134), Expect = 4e-07
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = -2
Query: 639 DVMEASYIDEMCSVFKLGVMCTATLPATRPSMKEVLPILLSFGEPFAYGEQKVSHYYDAA 460
D+ EAS + M +VFKLG+MCT TLP+ RPSMKEVL +L G ++ + Y+A
Sbjct: 926 DIKEASTTEAMTTVFKLGLMCTNTLPSHRPSMKEVLYVLRQQG--LEATKKTATEAYEAP 983
Query: 459 PLLKNSNRETRLDVD 415
L+ S R T V+
Sbjct: 984 LLVSLSGRRTSKRVE 998
>dbj|BAB91929.1| putative receptor-like kinase [Oryza sativa (japonica
cultivar-group)]
Length = 1063
Score = 50.1 bits (118), Expect = 3e-05
Identities = 28/61 (45%), Positives = 36/61 (58%), Gaps = 2/61 (3%)
Frame = -2
Query: 627 ASYIDEMCSVFKLGVMCTATLPATRPSMKEVLPILLSFGEPF--AYGEQKVSHYYDAAPL 454
A Y DE+ VF+LGVMCT PA+RP+MK+VL IL+ E + Y+ APL
Sbjct: 972 AGYSDEIEVVFRLGVMCTGATPASRPTMKDVLQILVKCSEQTHQKCKAESGQEEYEVAPL 1031
Query: 453 L 451
L
Sbjct: 1032 L 1032
>gb|AAC36318.1| leucine-rich receptor-like protein kinase [Malus x domestica]
Length = 999
Score = 45.4 bits (106), Expect = 6e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -2
Query: 633 MEASYIDEMCSVFKLGVMCTATLPATRPSMKEVLPILLSFG----EPFAYGEQKVSHYY 469
+E+ Y +E+C V +G++CT+ LP RPSM+ V+ +L G A E K++ YY
Sbjct: 930 LESCYKEEVCKVLNIGLLCTSPLPINRPSMRRVVKLLQEVGTEKHPQAAKKEGKLTPYY 988
>gb|AAM77879.1|AF509746_1 receptor-like kinase [Hordeum vulgare subsp. spontaneum]
Length = 327
Score = 42.0 bits (97), Expect = 0.007
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -2
Query: 630 EASYIDEMCSVFKLGVMCTATLPATRPSMKEVL 532
+A YID+M SVF+LGV CT P RPSM VL
Sbjct: 276 QARYIDDMASVFRLGVDCTVVDPQQRPSMHMVL 308
>gb|AAM77877.1|AF509744_1 receptor-like kinase [Hordeum vulgare subsp. vulgare]
Length = 327
Score = 42.0 bits (97), Expect = 0.007
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -2
Query: 630 EASYIDEMCSVFKLGVMCTATLPATRPSMKEVL 532
+A YID+M SVF+LGV CT P RPSM VL
Sbjct: 276 QARYIDDMASVFRLGVDCTVVDPQQRPSMHMVL 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,719,013
Number of Sequences: 1393205
Number of extensions: 12197967
Number of successful extensions: 27802
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 27085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27793
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
