Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001133A_C01 KMC001133A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566922.1| ubiquitin-specific protease 26 (UBP26); protein... 87 1e-16
gb|AAG42764.1|AF302674_1 ubiquitin-specific protease 26 [Arabido... 87 1e-16
pir||T46237 hypothetical protein T9C5.190 - Arabidopsis thaliana... 87 1e-16
gb|ZP_00097065.1| hypothetical protein [Desulfitobacterium hafni... 37 0.12
ref|NP_705512.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.80
>ref|NP_566922.1| ubiquitin-specific protease 26 (UBP26); protein id: At3g49600.1,
supported by cDNA: gi_11993491 [Arabidopsis thaliana]
Length = 1067
Score = 87.0 bits (214), Expect = 1e-16
Identities = 40/62 (64%), Positives = 51/62 (81%)
Frame = -3
Query: 549 IDDECTTLVDVNIFAGDQVIVRDSEIHENRDIADELCDEKMDSQHTEEGFRGTLLTSNVS 370
ID E TL D+NIF GD++ VRD+E+HE+RDIADELC++K +Q EEGFRGTLLT N+S
Sbjct: 1004 IDQESATLADMNIFPGDRLWVRDTEMHEHRDIADELCEKKPGAQDIEEGFRGTLLTGNIS 1063
Query: 369 SQ 364
S+
Sbjct: 1064 SE 1065
>gb|AAG42764.1|AF302674_1 ubiquitin-specific protease 26 [Arabidopsis thaliana]
Length = 1067
Score = 87.0 bits (214), Expect = 1e-16
Identities = 40/62 (64%), Positives = 51/62 (81%)
Frame = -3
Query: 549 IDDECTTLVDVNIFAGDQVIVRDSEIHENRDIADELCDEKMDSQHTEEGFRGTLLTSNVS 370
ID E TL D+NIF GD++ VRD+E+HE+RDIADELC++K +Q EEGFRGTLLT N+S
Sbjct: 1004 IDQESATLADMNIFPGDRLWVRDTEMHEHRDIADELCEKKPGAQDIEEGFRGTLLTGNIS 1063
Query: 369 SQ 364
S+
Sbjct: 1064 SE 1065
>pir||T46237 hypothetical protein T9C5.190 - Arabidopsis thaliana
gi|6561960|emb|CAB62464.1| putative protein [Arabidopsis
thaliana]
Length = 1672
Score = 87.0 bits (214), Expect = 1e-16
Identities = 40/62 (64%), Positives = 51/62 (81%)
Frame = -3
Query: 549 IDDECTTLVDVNIFAGDQVIVRDSEIHENRDIADELCDEKMDSQHTEEGFRGTLLTSNVS 370
ID E TL D+NIF GD++ VRD+E+HE+RDIADELC++K +Q EEGFRGTLLT N+S
Sbjct: 1609 IDQESATLADMNIFPGDRLWVRDTEMHEHRDIADELCEKKPGAQDIEEGFRGTLLTGNIS 1668
Query: 369 SQ 364
S+
Sbjct: 1669 SE 1670
>gb|ZP_00097065.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 572
Score = 37.4 bits (85), Expect = 0.12
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +3
Query: 363 PEMKHLMSKVFRETLPRYAANPFSRHKAHQQYLDFHGSQSP*L*LGLQQI 512
P M+ LM+++F+ET+ R PF R +Q+ ++ +GS P + G++ +
Sbjct: 251 PMMEELMARIFKETIGRDIPRPFPR-MTYQEAMELYGSDKPDIRFGMEMV 299
>ref|NP_705512.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615757|emb|CAD52749.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1384
Score = 34.7 bits (78), Expect = 0.80
Identities = 18/52 (34%), Positives = 34/52 (64%)
Frame = -2
Query: 403 VSRNTFDIKCFISGCLGIAFSAVCIFVCLYRRLKKKSNMKEKRNS*VGSNHV 248
+ +N+ D+K FI +AFS + I++CLY +KKK ++++N+ G N++
Sbjct: 1058 IYQNSDDLKYFI-----LAFSNMLIYLCLYESIKKK---RDEKNNKFGENNM 1101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,567,816
Number of Sequences: 1393205
Number of extensions: 9462988
Number of successful extensions: 22889
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22592
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
