Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001132A_C01 KMC001132A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_471119.1| similar to 2-succinyl-6-hydroxy-2,4-cyclohexadi... 32 3.3
ref|NP_465200.1| similar to 2-succinyl-6-hydroxy-2,4-cyclohexadi... 32 5.6
ref|ZP_00066606.1| hypothetical protein [Microbulbifer degradans... 31 7.3
gb|AAD51101.1|AF172352_1 GABA receptor subunit [Ceratitis capitata] 31 7.3
gb|AAM11303.1| RH68451p [Drosophila melanogaster] 31 9.6
>ref|NP_471119.1| similar to 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase / 2-oxoglutarate decarboxylase [Listeria
innocua] gi|25305989|pir||AF1655
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase / 2-oxoglutarate decarboxylase homolog menD
[imported] - Listeria innocua (strain Clip11262)
gi|16414270|emb|CAC97014.1| similar to
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase / 2-oxoglutarate decarboxylase [Listeria
innocua]
Length = 580
Score = 32.3 bits (72), Expect = 3.3
Identities = 16/52 (30%), Positives = 26/52 (49%)
Frame = +1
Query: 328 IYFYILKPSAVLLESPSNVTS*IKLSWKVLVSVLSKNGMPTSTTEKAWLQLW 483
I FY++ P A + VT I + L+ ++ +N MP T + +WL W
Sbjct: 313 IRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQN-MPDDTKDASWLNRW 363
>ref|NP_465200.1| similar to 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase / 2-oxoglutarate decarboxylase [Listeria
monocytogenes EGD-e] gi|25305987|pir||AC1284
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase / 2-oxoglutarate decarboxylase homolog menD
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16411111|emb|CAC99753.1| similar to
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase / 2-oxoglutarate decarboxylase [Listeria
monocytogenes]
Length = 580
Score = 31.6 bits (70), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (47%)
Frame = +1
Query: 328 IYFYILKPSAVLLESPSNVTS*IKLSWKVLVSVLSKNGMPTSTTEKAWLQLW 483
I FY++ P A + VT I + L+ ++ +N MP + AWL W
Sbjct: 313 IRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQN-MPDDAKDAAWLSRW 363
>ref|ZP_00066606.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 208
Score = 31.2 bits (69), Expect = 7.3
Identities = 15/43 (34%), Positives = 29/43 (66%), Gaps = 2/43 (4%)
Frame = -2
Query: 335 KYIEMKNAV--NFIYYQEFSVGLGSSLNLTAPFSHRRAT*VLI 213
K++E++NA +F+Y Q + G+G+S+ L A + ++T +LI
Sbjct: 64 KHLELRNAEKEHFLYCQNWQEGMGASIKLAANINKDKSTALLI 106
>gb|AAD51101.1|AF172352_1 GABA receptor subunit [Ceratitis capitata]
Length = 541
Score = 31.2 bits (69), Expect = 7.3
Identities = 18/53 (33%), Positives = 27/53 (49%)
Frame = +3
Query: 42 LNGNNEQPQHDKFAINHRHVLLKTCTHTYTVSQAHQYAPQERKRNRNEGFSHL 200
L+G P + A +H H H +T S AH +AP++ NR GFS++
Sbjct: 361 LDGVQPPPNPNPSAGDHGH------GHAHTHSHAHPHAPKQTVSNRPIGFSNM 407
>gb|AAM11303.1| RH68451p [Drosophila melanogaster]
Length = 178
Score = 30.8 bits (68), Expect = 9.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 166 LSCGAY*CAWDTVYVCVHVFSRTCLW 89
+ G Y C D +Y V VF+RT LW
Sbjct: 138 MDAGFYECQADNIYAIVEVFARTTLW 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,431,658
Number of Sequences: 1393205
Number of extensions: 10346887
Number of successful extensions: 25574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25528
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
