Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001131A_C01 KMC001131A_c01
(843 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK69757.1|AF383171_1 chromomethylase CMT2 [Arabidopsis thali... 209 4e-53
dbj|BAC53936.1| chromomethylase-like protein [Nicotiana tabacum] 167 1e-40
gb|AAN60988.1| Putative DNA cytosine methyltransferase MET2a [Or... 164 2e-39
gb|AAK11516.1|AF243043_1 DNA cytosine methyltransferase MET2a [Z... 164 2e-39
gb|AAM28227.1| DNA methyltransferase 105 [Zea mays] 162 6e-39
>gb|AAK69757.1|AF383171_1 chromomethylase CMT2 [Arabidopsis thaliana]
Length = 1244
Score = 209 bits (532), Expect = 4e-53
Identities = 101/137 (73%), Positives = 115/137 (83%), Gaps = 1/137 (0%)
Frame = -1
Query: 843 RHPTENPV-LPSGKPLVPDYALTFEQGKSKRPFARLWWDETVPTALTTPSCHHQAILHPV 667
R P+ PV LPSGKPLVP Y TF+QGKSKRPFARLWWDETVPT LT P+CH QA+LHP
Sbjct: 1102 RDPSMEPVILPSGKPLVPGYVFTFQQGKSKRPFARLWWDETVPTVLTVPTCHSQALLHPE 1161
Query: 666 QDRVLTVREFARLQGFPDYYRFSGTVKERYCQIGNAVAVSVSRALGHSLGIAYRKLSGNE 487
QDRVLT+RE ARLQGFPDY++F GT+KERYCQIGNAVAVSVSRALG+SLG+A+R L+ +E
Sbjct: 1162 QDRVLTIRESARLQGFPDYFQFCGTIKERYCQIGNAVAVSVSRALGYSLGMAFRGLARDE 1221
Query: 486 PLMTLPPKFSLSNYHQL 436
L+ LP FS S Y QL
Sbjct: 1222 HLIKLPQNFSHSTYPQL 1238
>dbj|BAC53936.1| chromomethylase-like protein [Nicotiana tabacum]
Length = 741
Score = 167 bits (424), Expect = 1e-40
Identities = 78/124 (62%), Positives = 95/124 (75%)
Frame = -1
Query: 831 ENPVLPSGKPLVPDYALTFEQGKSKRPFARLWWDETVPTALTTPSCHHQAILHPVQDRVL 652
E + SGKPLVPDYA+TF +G S +PF RLWWDE VPT +T H+Q ILHP QDRVL
Sbjct: 604 ERVKVASGKPLVPDYAITFVRGTSTKPFGRLWWDEIVPTVVTRAEPHNQVILHPEQDRVL 663
Query: 651 TVREFARLQGFPDYYRFSGTVKERYCQIGNAVAVSVSRALGHSLGIAYRKLSGNEPLMTL 472
T+RE ARLQGFPDYY+ +G +KERY Q+GNAVAV V+R LG+SL +A LS +PL++L
Sbjct: 664 TIRENARLQGFPDYYKLTGPIKERYMQVGNAVAVPVARVLGYSLALALEGLSEEKPLLSL 723
Query: 471 PPKF 460
PP F
Sbjct: 724 PPNF 727
>gb|AAN60988.1| Putative DNA cytosine methyltransferase MET2a [Oryza sativa (japonica
cultivar-group)]
Length = 1761
Score = 164 bits (415), Expect = 2e-39
Identities = 77/121 (63%), Positives = 96/121 (78%), Gaps = 1/121 (0%)
Frame = -1
Query: 819 LPSGKPLVPDYALTFEQGKSKRPFARLWWDETVPTALTTPSCHHQAILHPVQDRVLTVRE 640
L SGKPLVPDYA++F +GKS +PF RLWWDETVPT +T H+Q ILHP QDRVLT+RE
Sbjct: 885 LSSGKPLVPDYAISFVKGKSTKPFGRLWWDETVPTVVTRAEPHNQIILHPSQDRVLTIRE 944
Query: 639 FARLQGFPDYYRFSGTVKERYCQIGNAVAVSVSRALGHSLGIAYR-KLSGNEPLMTLPPK 463
ARLQGFPDYYR G +KE+Y Q+GNAVA+ V+RALG++LG+AYR + G+ ++ LP
Sbjct: 945 NARLQGFPDYYRLIGPLKEKYIQVGNAVAIPVARALGYALGLAYRGESDGDRAVLKLPES 1004
Query: 462 F 460
F
Sbjct: 1005 F 1005
>gb|AAK11516.1|AF243043_1 DNA cytosine methyltransferase MET2a [Zea mays]
Length = 912
Score = 164 bits (415), Expect = 2e-39
Identities = 79/126 (62%), Positives = 96/126 (75%), Gaps = 1/126 (0%)
Frame = -1
Query: 831 ENPVLPSGKPLVPDYALTFEQGKSKRPFARLWWDETVPTALTTPSCHHQAILHPVQDRVL 652
E L SGKPLVPDYA++F +GKS +PF RLWWDETVPT +T H+Q I+HP Q RVL
Sbjct: 762 ERVKLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQVIIHPTQARVL 821
Query: 651 TVREFARLQGFPDYYRFSGTVKERYCQIGNAVAVSVSRALGHSLGIAY-RKLSGNEPLMT 475
T+RE ARLQGFPDYYR G +KE+Y Q+GNAVAV V+RALG+ LG AY + G++PL
Sbjct: 822 TIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGESEGSDPLYQ 881
Query: 474 LPPKFS 457
LPP F+
Sbjct: 882 LPPSFT 887
>gb|AAM28227.1| DNA methyltransferase 105 [Zea mays]
Length = 915
Score = 162 bits (410), Expect = 6e-39
Identities = 79/126 (62%), Positives = 95/126 (74%), Gaps = 1/126 (0%)
Frame = -1
Query: 831 ENPVLPSGKPLVPDYALTFEQGKSKRPFARLWWDETVPTALTTPSCHHQAILHPVQDRVL 652
E L SGKPLVPDYA++F +GKS +PF RLWWDETVPT +T H+Q ILHP Q RVL
Sbjct: 766 ERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQVILHPTQARVL 825
Query: 651 TVREFARLQGFPDYYRFSGTVKERYCQIGNAVAVSVSRALGHSLGIAY-RKLSGNEPLMT 475
T+RE ARLQGFPDYYR G +KE+Y Q+GNAVAV V+RALG+ LG AY + G++PL
Sbjct: 826 TIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGESDGSQPLYQ 885
Query: 474 LPPKFS 457
LP F+
Sbjct: 886 LPASFT 891
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 743,879,024
Number of Sequences: 1393205
Number of extensions: 16334068
Number of successful extensions: 36864
Number of sequences better than 10.0: 240
Number of HSP's better than 10.0 without gapping: 35271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36800
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44037481446
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
