Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001130A_C01 KMC001130A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72076.1| Unknown protein [Arabidopsis thaliana] 231 5e-60
ref|NP_177189.1| ubiquitin-protein ligase 2 (UPL2), putative; pr... 231 5e-60
gb|AAF36455.1|AF127565_1 ubiquitin-protein ligase 2 [Arabidopsis... 231 5e-60
gb|AAF36454.1|AF127564_1 ubiquitin-protein ligase 1 [Arabidopsis... 231 6e-60
ref|NP_175982.1| ubiquitin-protein ligase 1 (UPL1), putative; pr... 231 6e-60
>gb|AAN72076.1| Unknown protein [Arabidopsis thaliana]
Length = 344
Score = 231 bits (589), Expect = 5e-60
Identities = 108/136 (79%), Positives = 122/136 (89%)
Frame = -3
Query: 578 LISIFNDKELELLISGLPDIDLDDLRANTDYSGYSAASPVIPWFWEVIQGFSQEDKARLL 399
L+SIFNDKELELLISGLP+ID DDL+ANT+Y+ Y+ SPVI WFWEV++ FS+ED AR L
Sbjct: 208 LVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFL 267
Query: 398 QFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLE 219
QFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGSP+ LPSAHTCFNQLDLPEY SK+ ++
Sbjct: 268 QFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQ 327
Query: 218 ERLLLAIHEANEGFGF 171
ERLLLAIHEANEGFGF
Sbjct: 328 ERLLLAIHEANEGFGF 343
>ref|NP_177189.1| ubiquitin-protein ligase 2 (UPL2), putative; protein id: At1g70320.1
[Arabidopsis thaliana]
Length = 3658
Score = 231 bits (589), Expect = 5e-60
Identities = 108/136 (79%), Positives = 122/136 (89%)
Frame = -3
Query: 578 LISIFNDKELELLISGLPDIDLDDLRANTDYSGYSAASPVIPWFWEVIQGFSQEDKARLL 399
L+SIFNDKELELLISGLP+ID DDL+ANT+Y+ Y+ SPVI WFWEV++ FS+ED AR L
Sbjct: 3522 LVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFL 3581
Query: 398 QFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLE 219
QFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGSP+ LPSAHTCFNQLDLPEY SK+ ++
Sbjct: 3582 QFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQ 3641
Query: 218 ERLLLAIHEANEGFGF 171
ERLLLAIHEANEGFGF
Sbjct: 3642 ERLLLAIHEANEGFGF 3657
>gb|AAF36455.1|AF127565_1 ubiquitin-protein ligase 2 [Arabidopsis thaliana]
Length = 3658
Score = 231 bits (589), Expect = 5e-60
Identities = 108/136 (79%), Positives = 122/136 (89%)
Frame = -3
Query: 578 LISIFNDKELELLISGLPDIDLDDLRANTDYSGYSAASPVIPWFWEVIQGFSQEDKARLL 399
L+SIFNDKELELLISGLP+ID DDL+ANT+Y+ Y+ SPVI WFWEV++ FS+ED AR L
Sbjct: 3522 LVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFL 3581
Query: 398 QFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLE 219
QFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGSP+ LPSAHTCFNQLDLPEY SK+ ++
Sbjct: 3582 QFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQ 3641
Query: 218 ERLLLAIHEANEGFGF 171
ERLLLAIHEANEGFGF
Sbjct: 3642 ERLLLAIHEANEGFGF 3657
>gb|AAF36454.1|AF127564_1 ubiquitin-protein ligase 1 [Arabidopsis thaliana]
Length = 3681
Score = 231 bits (588), Expect = 6e-60
Identities = 108/136 (79%), Positives = 123/136 (90%)
Frame = -3
Query: 578 LISIFNDKELELLISGLPDIDLDDLRANTDYSGYSAASPVIPWFWEVIQGFSQEDKARLL 399
L+SIFNDKELELLISGLP+ID DDL+ANT+Y+ Y+A SPVI WFWEV++ FS+ED AR L
Sbjct: 3545 LVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFL 3604
Query: 398 QFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLE 219
QFVTGTSKVPLEGF ALQGISG Q+ QIHKAYG+P+ LPSAHTCFNQLDLPEY SK+ L+
Sbjct: 3605 QFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQ 3664
Query: 218 ERLLLAIHEANEGFGF 171
ERLLLAIHEA+EGFGF
Sbjct: 3665 ERLLLAIHEASEGFGF 3680
>ref|NP_175982.1| ubiquitin-protein ligase 1 (UPL1), putative; protein id: At1g55860.1
[Arabidopsis thaliana]
Length = 3891
Score = 231 bits (588), Expect = 6e-60
Identities = 108/136 (79%), Positives = 123/136 (90%)
Frame = -3
Query: 578 LISIFNDKELELLISGLPDIDLDDLRANTDYSGYSAASPVIPWFWEVIQGFSQEDKARLL 399
L+SIFNDKELELLISGLP+ID DDL+ANT+Y+ Y+A SPVI WFWEV++ FS+ED AR L
Sbjct: 3755 LVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFL 3814
Query: 398 QFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLE 219
QFVTGTSKVPLEGF ALQGISG Q+ QIHKAYG+P+ LPSAHTCFNQLDLPEY SK+ L+
Sbjct: 3815 QFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQ 3874
Query: 218 ERLLLAIHEANEGFGF 171
ERLLLAIHEA+EGFGF
Sbjct: 3875 ERLLLAIHEASEGFGF 3890
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,442,965
Number of Sequences: 1393205
Number of extensions: 11203143
Number of successful extensions: 27305
Number of sequences better than 10.0: 333
Number of HSP's better than 10.0 without gapping: 26135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26925
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
