Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001129A_C01 KMC001129A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703250.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.86
ref|NP_113365.1| hypothetical protein [Guillardia theta] gi|2539... 33 3.3
ref|NP_501516.1| Yeast RAD50 like protein [Caenorhabditis elegan... 32 4.3
ref|NP_800842.1| putative transcriptional regulator ToxR [Vibrio... 32 7.3
>ref|NP_703250.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23510622|emb|CAD49007.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1389
Score = 34.7 bits (78), Expect = 0.86
Identities = 28/91 (30%), Positives = 44/91 (47%)
Frame = +3
Query: 123 HTLFILNKKKEKTKKSVYENLLFLFFCHGLNNIQHKRSLQQTQ*TRCIYSNQ*IVTSTMV 302
H +ILN KK K + + + ++ +F H NNI HK L S ++ ++
Sbjct: 890 HFFYILNIKKGK-ENVILQTVVQIFLFHYKNNIVHKTFL---------ISLLNLINYKIL 939
Query: 303 SPVQCLHSCTVV*FPHVNRINQNLLGGSLHF 395
+ L + T + + H N INQN L S+HF
Sbjct: 940 IDLHNLCTITSIAY-HFNIINQNFLNLSIHF 969
>ref|NP_113365.1| hypothetical protein [Guillardia theta] gi|25396811|pir||B90099
hypothetical protein orf262 [imported] - Guillardia
theta nucleomorph gi|13794546|gb|AAK39921.1|AF165818_129
hypothetical protein [Guillardia theta]
Length = 262
Score = 32.7 bits (73), Expect = 3.3
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = -1
Query: 217 LFSPWQKKRKSKFSYTLFFVFSFFLLRMKSVWFYTKS 107
+F +K +KSKF YT+ FS +MKS +FY +S
Sbjct: 54 IFFKKKKFKKSKFIYTIGLCFSEKFQKMKSTFFYNRS 90
>ref|NP_501516.1| Yeast RAD50 like protein [Caenorhabditis elegans]
gi|7496918|pir||T19684 hypothetical protein C33D9.5 -
Caenorhabditis elegans gi|3874634|emb|CAA92288.1|
Hypothetical protein C33D9.5 [Caenorhabditis elegans]
Length = 523
Score = 32.3 bits (72), Expect = 4.3
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +3
Query: 21 ASKYVNIQDSVTDTDSFKPSAHCSDYRSNDLV*NHTLFILNKKKEKTKKSVYENLLFLFF 200
A N+Q+++T++DS C R+ + N + +LNKK KS+ E + L
Sbjct: 417 AGPMYNLQENLTNSDS------CCTSRNVSVENNDEVKVLNKKV----KSLEERMENLVS 466
Query: 201 CHGLNNIQHKRSLQQTQ*T 257
C+G HK+ + + Q T
Sbjct: 467 CNGNQEASHKKQVLELQST 485
>ref|NP_800842.1| putative transcriptional regulator ToxR [Vibrio parahaemolyticus
RIMD 2210633] gi|28809700|dbj|BAC62675.1| putative
transcriptional regulator ToxR [Vibrio parahaemolyticus]
Length = 253
Score = 31.6 bits (70), Expect = 7.3
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 49 VSLTLTLSSPVLIVQTIVVMTWYKTIHFSFSTKRKKKQKRV 171
V+L LS+ ++ + + VM KTI FSF +K KK + RV
Sbjct: 191 VALINALSAKEIVPERLYVMLNDKTISFSFISKNKKSKNRV 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,584,926
Number of Sequences: 1393205
Number of extensions: 11006349
Number of successful extensions: 25990
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25963
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
