Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001126A_C01 KMC001126A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190681.1| putative protein; protein id: At3g51120.1 [Arab... 99 3e-20
pir||B84560 hypothetical protein At2g18090 [imported] - Arabidop... 99 4e-20
ref|NP_179400.2| unknown protein; protein id: At2g18090.1, suppo... 99 4e-20
gb|AAG13559.1|AC073867_5 putative proteophosphoglycan [Oryza sat... 78 8e-14
ref|NP_179241.1| hypothetical protein; protein id: At2g16485.1 [... 53 3e-06
>ref|NP_190681.1| putative protein; protein id: At3g51120.1 [Arabidopsis thaliana]
gi|11290564|pir||T45743 hypothetical protein F24M12.160
- Arabidopsis thaliana gi|6562264|emb|CAB62634.1|
putative protein [Arabidopsis thaliana]
Length = 1247
Score = 99.4 bits (246), Expect = 3e-20
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = +2
Query: 440 PPPPPPKQPEDEEDVCFICFDGGSLVLCDRRGWPKAYHPACVKRDEAFF 586
PPPPPPK+ + EEDVCFICFDGG LVLCDRR PKAYHPAC+KRDEAFF
Sbjct: 53 PPPPPPKKEDKEEDVCFICFDGGDLVLCDRRNCPKAYHPACIKRDEAFF 101
>pir||B84560 hypothetical protein At2g18090 [imported] - Arabidopsis thaliana
gi|4406809|gb|AAD20117.1| unknown protein [Arabidopsis
thaliana]
Length = 802
Score = 99.0 bits (245), Expect = 4e-20
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = +2
Query: 377 ADGVVLKRKRGRPAKGVSKTAPPPPPPKQPEDEEDVCFICFDGGSLVLCDRRGWPKAYHP 556
+D + + +RGRP + ++K + PP K+ EDE DVCF+CFDGGSLVLCDRRG PKAYHP
Sbjct: 47 SDSLKKRGRRGRPPRILAKASSPPISRKRREDE-DVCFVCFDGGSLVLCDRRGCPKAYHP 105
Query: 557 ACVKRDEAFFSSK 595
ACVKR EAFF S+
Sbjct: 106 ACVKRTEAFFRSR 118
>ref|NP_179400.2| unknown protein; protein id: At2g18090.1, supported by cDNA:
gi_13877654 [Arabidopsis thaliana]
gi|13877655|gb|AAK43905.1|AF370586_1 Unknown protein
[Arabidopsis thaliana]
Length = 824
Score = 99.0 bits (245), Expect = 4e-20
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = +2
Query: 377 ADGVVLKRKRGRPAKGVSKTAPPPPPPKQPEDEEDVCFICFDGGSLVLCDRRGWPKAYHP 556
+D + + +RGRP + ++K + PP K+ EDE DVCF+CFDGGSLVLCDRRG PKAYHP
Sbjct: 47 SDSLKKRGRRGRPPRILAKASSPPISRKRREDE-DVCFVCFDGGSLVLCDRRGCPKAYHP 105
Query: 557 ACVKRDEAFFSSK 595
ACVKR EAFF S+
Sbjct: 106 ACVKRTEAFFRSR 118
>gb|AAG13559.1|AC073867_5 putative proteophosphoglycan [Oryza sativa]
Length = 742
Score = 78.2 bits (191), Expect = 8e-14
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 13/102 (12%)
Frame = +2
Query: 263 PGSKVVRVASEL---LNGRGLEESKKLDGVSGMA-------ERPAPAVADGVVLKRKRGR 412
PG+ VV A+ + G ++S L + G + PAV VV+KRKRGR
Sbjct: 66 PGAAVVAAAARKEASASAEGFDDSHFLGSIMGAPAHQHQHQHQQPPAVGPPVVVKRKRGR 125
Query: 413 PAKGVSKTAPPPPPP---KQPEDEEDVCFICFDGGSLVLCDR 529
P K APPPPP K+ +DE+ VCFICFDGG+LV+CD+
Sbjct: 126 PPKNRDGAAPPPPPKPVKKREDDEDVVCFICFDGGNLVVCDK 167
>ref|NP_179241.1| hypothetical protein; protein id: At2g16485.1 [Arabidopsis
thaliana] gi|20198031|gb|AAM15362.1| hypothetical
protein [Arabidopsis thaliana]
Length = 617
Score = 52.8 bits (125), Expect = 3e-06
Identities = 27/46 (58%), Positives = 29/46 (62%)
Frame = +2
Query: 395 KRKRGRPAKGVSKTAPPPPPPKQPEDEEDVCFICFDGGSLVLCDRR 532
KRKRGR K V T + EEDVCF+CFDGG LVLCDRR
Sbjct: 580 KRKRGRNTKTVKGTGK--------KKEEDVCFMCFDGGDLVLCDRR 617
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,421,984
Number of Sequences: 1393205
Number of extensions: 12476786
Number of successful extensions: 107024
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 69254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95860
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
