Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001119A_C01 KMC001119A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189632.1| gene_id:K17E7.15~unknown protein; protein id: A... 120 1e-26
gb|AAB65433.1| HvB12D homolog [Oryza sativa] gi|18644696|gb|AAL7... 109 2e-23
gb|AAD22104.1| B12D protein [Ipomoea batatas] 108 5e-23
pir||S60284 B12D protein - barley gi|471319|emb|CAA54065.1| HvB1... 101 6e-21
ref|NP_190397.1| B12D-like protein; protein id: At3g48140.1, sup... 99 5e-20
>ref|NP_189632.1| gene_id:K17E7.15~unknown protein; protein id: At3g29970.1
[Arabidopsis thaliana] gi|13477085|dbj|BAB02998.1|
gene_id:K17E7.15~unknown protein [Arabidopsis thaliana]
Length = 87
Score = 120 bits (301), Expect = 1e-26
Identities = 54/87 (62%), Positives = 71/87 (81%)
Frame = -2
Query: 499 MGRWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISQARRSMGVLFDNQEEGERYA 320
MGRW++PEVYPLL AM FVT M VFQLTRN NPD RI++ R MG+L +N++EGE+YA
Sbjct: 1 MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGIL-ENKDEGEKYA 59
Query: 319 EHGLRKFLRTRPPEIMPTINHFFSEEN 239
+H RK+LRTR P++MP++N FFS+E+
Sbjct: 60 QHNFRKYLRTRQPQVMPSLNRFFSQED 86
>gb|AAB65433.1| HvB12D homolog [Oryza sativa] gi|18644696|gb|AAL76334.1| putative
G-box binding protein [Oryza sativa]
Length = 89
Score = 109 bits (273), Expect = 2e-23
Identities = 50/83 (60%), Positives = 64/83 (76%)
Frame = -2
Query: 493 RWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISQARRSMGVLFDNQEEGERYAEH 314
RW++PEVYPL AAM G+C FQL RN+ GNP+VR+++ R+ GVL +N EEG RYAEH
Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVL-ENHEEGRRYAEH 63
Query: 313 GLRKFLRTRPPEIMPTINHFFSE 245
GLR ++R + PEIMP IN FF+E
Sbjct: 64 GLRNYVRDKTPEIMPAINKFFTE 86
>gb|AAD22104.1| B12D protein [Ipomoea batatas]
Length = 90
Score = 108 bits (270), Expect = 5e-23
Identities = 49/83 (59%), Positives = 66/83 (79%)
Frame = -2
Query: 493 RWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISQARRSMGVLFDNQEEGERYAEH 314
RW++PEVYPL AAM+ G+C FQL RNL NP+VR+++ R+ GVL +N EEG++YAEH
Sbjct: 5 RWIRPEVYPLFAAMSVAVGICGFQLIRNLTTNPEVRVNKEGRAAGVL-ENYEEGKKYAEH 63
Query: 313 GLRKFLRTRPPEIMPTINHFFSE 245
LRKF+R + PEIMP++N FFS+
Sbjct: 64 SLRKFVRNKSPEIMPSLNRFFSD 86
>pir||S60284 B12D protein - barley gi|471319|emb|CAA54065.1| HvB12D [Hordeum
vulgare subsp. vulgare] gi|3445292|emb|CAA70936.1|
B12Dg1 [Hordeum vulgare subsp. vulgare]
Length = 87
Score = 101 bits (252), Expect = 6e-21
Identities = 46/82 (56%), Positives = 61/82 (74%)
Frame = -2
Query: 493 RWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISQARRSMGVLFDNQEEGERYAEH 314
+W++PEVYPL AA G+C F L RN+ GNP+VR+S+ R+ GVL +N EEG RYAEH
Sbjct: 4 KWVRPEVYPLFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVL-ENHEEGRRYAEH 62
Query: 313 GLRKFLRTRPPEIMPTINHFFS 248
GLR +++ + PEIMP IN FF+
Sbjct: 63 GLRAYVQDKTPEIMPGINKFFT 84
>ref|NP_190397.1| B12D-like protein; protein id: At3g48140.1, supported by cDNA:
gi_19698958 [Arabidopsis thaliana]
gi|7487384|pir||T13003 hypothetical protein T24C20.20 -
Arabidopsis thaliana gi|5541720|emb|CAB51061.1|
B12D-like protein [Arabidopsis thaliana]
gi|19698959|gb|AAL91215.1| B12D-like protein
[Arabidopsis thaliana] gi|24899711|gb|AAN65070.1|
B12D-like protein [Arabidopsis thaliana]
Length = 88
Score = 98.6 bits (244), Expect = 5e-20
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = -2
Query: 493 RWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISQARRSMGVLFDNQEEGERYAEH 314
RW++PEVYPL AA G+C F L RN+ GNP+VR ++ R+ G+L DN EGE+Y E+
Sbjct: 4 RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGIL-DNHAEGEKYKEN 62
Query: 313 GLRKFLRTRPPEIMPTINHFFSE 245
LRKF+R + PEIMP +N FF++
Sbjct: 63 FLRKFVRNKKPEIMPGLNKFFTD 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,484,699
Number of Sequences: 1393205
Number of extensions: 9969173
Number of successful extensions: 23368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23349
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
