Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001118A_C01 KMC001118A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173345.1| unknown protein; protein id: At1g19110.1 [Arabi... 116 2e-25
gb|AAF79294.1|AC068602_17 F14D16.26 [Arabidopsis thaliana] 116 2e-25
gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|2319796... 116 2e-25
dbj|BAC16497.1| contains ESTs D15570(C0847A),C98159(C0847)~simil... 91 1e-17
ref|NP_177394.1| hypothetical protein; protein id: At1g72500.1 [... 84 2e-15
>ref|NP_173345.1| unknown protein; protein id: At1g19110.1 [Arabidopsis thaliana]
Length = 759
Score = 116 bits (290), Expect = 2e-25
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Frame = -2
Query: 512 RMILLPHIGVGFGNLTATAENTPPG--AEKMLEMPEIF-KAASNCCSTLCSYCCCMCCIQ 342
R I L +G+GFG+ TAT EN PPG +K + E F KAAS+CC +LC+ CCCMCC+Q
Sbjct: 661 RTIPLQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQ 720
Query: 341 CFTRMNNQCLTALTQLCVGIGCFGCLTCCSDICCGGND 228
C +++N+QC+ TQL I C C CCS +CC G+D
Sbjct: 721 CCSKLNDQCVLVFTQLFTAIACIACFECCSTVCCSGDD 758
>gb|AAF79294.1|AC068602_17 F14D16.26 [Arabidopsis thaliana]
Length = 736
Score = 116 bits (290), Expect = 2e-25
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Frame = -2
Query: 512 RMILLPHIGVGFGNLTATAENTPPG--AEKMLEMPEIF-KAASNCCSTLCSYCCCMCCIQ 342
R I L +G+GFG+ TAT EN PPG +K + E F KAAS+CC +LC+ CCCMCC+Q
Sbjct: 638 RTIPLQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQ 697
Query: 341 CFTRMNNQCLTALTQLCVGIGCFGCLTCCSDICCGGND 228
C +++N+QC+ TQL I C C CCS +CC G+D
Sbjct: 698 CCSKLNDQCVLVFTQLFTAIACIACFECCSTVCCSGDD 735
>gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|23197960|gb|AAN15507.1|
unknown protein [Arabidopsis thaliana]
Length = 754
Score = 116 bits (290), Expect = 2e-25
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Frame = -2
Query: 512 RMILLPHIGVGFGNLTATAENTPPG--AEKMLEMPEIF-KAASNCCSTLCSYCCCMCCIQ 342
R I L +G+GFG+ TAT EN PPG +K + E F KAAS+CC +LC+ CCCMCC+Q
Sbjct: 656 RTIPLQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQ 715
Query: 341 CFTRMNNQCLTALTQLCVGIGCFGCLTCCSDICCGGND 228
C +++N+QC+ TQL I C C CCS +CC G+D
Sbjct: 716 CCSKLNDQCVLVFTQLFTAIACIACFECCSTVCCSGDD 753
>dbj|BAC16497.1| contains ESTs D15570(C0847A),C98159(C0847)~similar to Arabidopsis
thaliana chromosome 1, At1g19110~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 755
Score = 90.9 bits (224), Expect = 1e-17
Identities = 42/96 (43%), Positives = 55/96 (56%), Gaps = 2/96 (2%)
Frame = -2
Query: 512 RMILLPHIGVGFGNLTATAEN--TPPGAEKMLEMPEIFKAASNCCSTLCSYCCCMCCIQC 339
R I L + +GFG+ AT EN T G K LE EI A+ CCS L CCMCCI+
Sbjct: 659 RRIPLQCLKLGFGDRAATRENLVTGFGDVKPLETFEILNKAAGCCSRLADCLCCMCCIKA 718
Query: 338 FTRMNNQCLTALTQLCVGIGCFGCLTCCSDICCGGN 231
+MN+QC +TQ+C C GC CC+++C G +
Sbjct: 719 CNKMNDQCAIVMTQVCAAFACLGCYECCAELCSGSD 754
>ref|NP_177394.1| hypothetical protein; protein id: At1g72500.1 [Arabidopsis
thaliana] gi|25406186|pir||C96749 hypothetical protein
T10D10.3 [imported] - Arabidopsis thaliana
gi|12325279|gb|AAG52586.1|AC016529_17 hypothetical
protein; 14673-17893 [Arabidopsis thaliana]
Length = 758
Score = 83.6 bits (205), Expect = 2e-15
Identities = 37/100 (37%), Positives = 54/100 (54%)
Frame = -2
Query: 542 HEANTNVQGQRMILLPHIGVGFGNLTATAENTPPGAEKMLEMPEIFKAASNCCSTLCSYC 363
H+ R LL G GFGN+ AT +N PP E+ E+ E + S +
Sbjct: 656 HKQMQRSNSMRRSLLGKQGYGFGNVAATLKNVPPWMEEPKEV-EGTELLIRAASGVVDRV 714
Query: 362 CCMCCIQCFTRMNNQCLTALTQLCVGIGCFGCLTCCSDIC 243
CCMCC+QC +R+++QC +QLC + CF C+ CC ++C
Sbjct: 715 CCMCCLQCMSRVSDQCTIVFSQLCAALACFQCIGCCFEVC 754
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,854,447
Number of Sequences: 1393205
Number of extensions: 10316853
Number of successful extensions: 33197
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 29629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32301
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
