Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001117A_C01 KMC001117A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42925.1| unknown protein [Arabidopsis thaliana] 197 8e-50
gb|AAM97054.1| unknown protein [Arabidopsis thaliana] gi|2319795... 197 8e-50
pir||T08116 hypothetical protein - Monterey pine gi|2935529|gb|A... 196 1e-49
gb|AAN13052.1| unknown protein [Arabidopsis thaliana] 192 2e-48
gb|AAM61190.1| unknown [Arabidopsis thaliana] 192 2e-48
>dbj|BAC42925.1| unknown protein [Arabidopsis thaliana]
Length = 311
Score = 197 bits (501), Expect = 8e-50
Identities = 88/110 (80%), Positives = 101/110 (91%)
Frame = -3
Query: 585 YGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHREGAYKHLM 406
YG+Y+E CGL+NVLMSWGHDDYMYLVAKEN+TTLPSA LFIIRYHSFYALH+ AYKHLM
Sbjct: 202 YGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAYKHLM 261
Query: 405 NEEDFENLEWLHIFNKYDLYSKSQVRIDVEKVKPYYLSLIEKYFPAKLKW 256
N ED EN++WL +FNKYDLYSKS+VR++VE+VKPYYLSL KYFP+KLKW
Sbjct: 262 NNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311
>gb|AAM97054.1| unknown protein [Arabidopsis thaliana] gi|23197958|gb|AAN15506.1|
unknown protein [Arabidopsis thaliana]
Length = 311
Score = 197 bits (501), Expect = 8e-50
Identities = 88/110 (80%), Positives = 101/110 (91%)
Frame = -3
Query: 585 YGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHREGAYKHLM 406
YG+Y+E CGL+NVLMSWGHDDYMYLVAKEN+TTLPSA LFIIRYHSFYALH+ AYKHLM
Sbjct: 202 YGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAYKHLM 261
Query: 405 NEEDFENLEWLHIFNKYDLYSKSQVRIDVEKVKPYYLSLIEKYFPAKLKW 256
N ED EN++WL +FNKYDLYSKS+VR++VE+VKPYYLSL KYFP+KLKW
Sbjct: 262 NNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311
>pir||T08116 hypothetical protein - Monterey pine gi|2935529|gb|AAC05150.1|
PRE87 gene product [Pinus radiata]
Length = 217
Score = 196 bits (499), Expect = 1e-49
Identities = 90/110 (81%), Positives = 100/110 (90%)
Frame = -3
Query: 585 YGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHREGAYKHLM 406
YG+YSEKCGL+NVLMSWGHD+YMYLVAK N TTLP AALFIIR+HSFY LHREGAY HL+
Sbjct: 108 YGVYSEKCGLDNVLMSWGHDEYMYLVAKMNNTTLPPAALFIIRFHSFYPLHREGAYMHLL 167
Query: 405 NEEDFENLEWLHIFNKYDLYSKSQVRIDVEKVKPYYLSLIEKYFPAKLKW 256
N+ED E LEWL IFNKYDLYSKS+VRIDVE+VKPYY SLI+KYFP KL+W
Sbjct: 168 NDEDKEMLEWLKIFNKYDLYSKSKVRIDVEEVKPYYQSLIDKYFPPKLRW 217
>gb|AAN13052.1| unknown protein [Arabidopsis thaliana]
Length = 317
Score = 192 bits (489), Expect = 2e-48
Identities = 86/109 (78%), Positives = 96/109 (87%)
Frame = -3
Query: 582 GMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHREGAYKHLMN 403
G+YSE CGLNNV+MSWGHDDYMYLVAKEN +TLPSA FIIRYHSFY LH G Y HLMN
Sbjct: 209 GIYSEGCGLNNVMMSWGHDDYMYLVAKENGSTLPSAGQFIIRYHSFYPLHTAGEYTHLMN 268
Query: 402 EEDFENLEWLHIFNKYDLYSKSQVRIDVEKVKPYYLSLIEKYFPAKLKW 256
EED ENL+WLH+FNKYDLYSKS+V +DVEKVKPYY+SLI+KYFP L+W
Sbjct: 269 EEDKENLKWLHVFNKYDLYSKSKVHVDVEKVKPYYMSLIKKYFPENLRW 317
>gb|AAM61190.1| unknown [Arabidopsis thaliana]
Length = 314
Score = 192 bits (489), Expect = 2e-48
Identities = 86/109 (78%), Positives = 97/109 (88%)
Frame = -3
Query: 582 GMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHREGAYKHLMN 403
G+YSE CGL NVLMSWGHDDYMYLVAKEN +TLPS LFIIRYHSFY LH+ GAY HLMN
Sbjct: 206 GIYSEGCGLENVLMSWGHDDYMYLVAKENGSTLPSPGLFIIRYHSFYPLHKAGAYTHLMN 265
Query: 402 EEDFENLEWLHIFNKYDLYSKSQVRIDVEKVKPYYLSLIEKYFPAKLKW 256
EED ENL+WLH+FNKYDLYSKS+V ++VEKVKPYY+SLI+KYFP L+W
Sbjct: 266 EEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,869,039
Number of Sequences: 1393205
Number of extensions: 9903615
Number of successful extensions: 22984
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 22532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22969
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
