Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001116A_C03 KMC001116A_c03
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_620752.1| L protein; L [Watermelon spotted wilt virus] gi... 35 0.96
dbj|BAC15825.1| thaumatin-like protein [Oryza sativa (japonica c... 33 2.8
pir||C96730 probable ABC transporter F5A18.21 [imported] - Arabi... 32 4.8
gb|AAL85485.1| transporter associated with antigen processing-li... 32 4.8
ref|NP_177218.2| ABC transporter family protein; protein id: At1... 32 4.8
>ref|NP_620752.1| L protein; L [Watermelon spotted wilt virus]
gi|12002280|gb|AAG43276.1|AF133128_1 L protein; L
[watermelon spotted wilt virus]
Length = 2878
Score = 34.7 bits (78), Expect = 0.96
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 18 DRFELMKCHQSWASCISSNQVLNINITFTFIK*TVSI*SYH----HDDHLDYE--LNIHV 179
D FEL+K ++ +C +SN VLN+ I F IK I + + H DYE LN V
Sbjct: 2551 DLFELLKLIKACEACHTSNSVLNL-IAFKNIKNKTFIPGFKKNLPNTVHFDYEMKLNNEV 2609
Query: 180 EHQYYIYNGASL 215
+++Y Y SL
Sbjct: 2610 MNKFYEYKTISL 2621
>dbj|BAC15825.1| thaumatin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 257
Score = 33.1 bits (74), Expect = 2.8
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 218 FVLDESCCRGRSASPDAC 271
F DE CCRGR ASPD C
Sbjct: 192 FGTDEQCCRGRFASPDKC 209
>pir||C96730 probable ABC transporter F5A18.21 [imported] - Arabidopsis thaliana
gi|12324752|gb|AAG52334.1|AC011663_13 putative ABC
transporter; 82503-78258 [Arabidopsis thaliana]
Length = 659
Score = 32.3 bits (72), Expect = 4.8
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = -2
Query: 579 SHRELILKDGLYAWLTRKQAGAM 511
SH+EL+ KDGLYA LT++Q A+
Sbjct: 636 SHKELLSKDGLYARLTKRQNDAV 658
>gb|AAL85485.1| transporter associated with antigen processing-like protein
[Arabidopsis thaliana]
Length = 700
Score = 32.3 bits (72), Expect = 4.8
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = -2
Query: 579 SHRELILKDGLYAWLTRKQAGAM 511
SH+EL+ KDGLYA LT++Q A+
Sbjct: 677 SHKELLSKDGLYARLTKRQNDAV 699
>ref|NP_177218.2| ABC transporter family protein; protein id: At1g70610.1
[Arabidopsis thaliana]
Length = 721
Score = 32.3 bits (72), Expect = 4.8
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = -2
Query: 579 SHRELILKDGLYAWLTRKQAGAM 511
SH+EL+ KDGLYA LT++Q A+
Sbjct: 698 SHKELLSKDGLYARLTKRQNDAV 720
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,249,894
Number of Sequences: 1393205
Number of extensions: 10511755
Number of successful extensions: 18206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18201
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
