Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001113A_C01 KMC001113A_c01
(788 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO25542.1| GAMYB-binding protein [Hordeum vulgare subsp. vul... 34 2.8
gb|EAA22226.1| hypothetical protein [Plasmodium yoelii yoelii] 34 2.8
gb|EAA40828.1| GLP_154_17458_16565 [Giardia lamblia ATCC 50803] 33 6.2
ref|NP_281254.1| putative type IIS restriction /modification enz... 32 8.1
>gb|AAO25542.1| GAMYB-binding protein [Hordeum vulgare subsp. vulgare]
Length = 515
Score = 33.9 bits (76), Expect = 2.8
Identities = 21/49 (42%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Frame = -2
Query: 139 RDTEAESFDQFDGE---ERP*HNRLKERLEREARTERELRMKERLESRE 2
RD E E D D + E+P R + R EREAR ER+ +ER RE
Sbjct: 270 RDRERERVDDGDADMDLEQPREQRRETREEREARIERDRIREERRRERE 318
>gb|EAA22226.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1961
Score = 33.9 bits (76), Expect = 2.8
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = -2
Query: 325 SS*KIEDIN*SIINSISILPT*ILTEKSKKIQGSEKGRKHYLLTLSD*EIRKPSSVVAC- 149
SS K ++IN + ++ + I + KK +G KG+ + D E++K + V
Sbjct: 572 SSKKKKNINDKRVRALLYIFKYIKNTQRKKGKGKGKGKNDQIYLFDDTELKKLNKQVDLY 631
Query: 148 ---VQLRDTEAESFDQFDGEERP*HNRLKERLEREARTE 41
V+ R+ + + F QF+ +E+ + KER ER +T+
Sbjct: 632 MDFVKNREYKNDMFIQFEEKEKKEKSENKERGERGEKTD 670
>gb|EAA40828.1| GLP_154_17458_16565 [Giardia lamblia ATCC 50803]
Length = 297
Score = 32.7 bits (73), Expect = 6.2
Identities = 25/84 (29%), Positives = 40/84 (46%)
Frame = +1
Query: 1 SLCSPASPSFEALSLFVPLSPASPSVGCVKASPLHRTDRSSLPQCLSTARTRRPTRVF*F 180
S +P SP+ + F+ +SP S +K P HR D++SL T P+RV
Sbjct: 173 SRVAPGSPTIKTPKQFLDVSPHSSIKSHLKDRPEHRADQNSLLGA-GHLHTPAPSRV--- 228
Query: 181 LSHSKSKGNAFCLSHFPEFSLISQ 252
HS+ +G L P+ ++ S+
Sbjct: 229 --HSRLQGTNSALGVAPDNNIPSK 250
>ref|NP_281254.1| putative type IIS restriction /modification enzyme, C-terminal half
[Campylobacter jejuni] gi|11347195|pir||C81419 probable
type IIS restriction /modification enzyme, C-terminal
half Cj0032 [imported] - Campylobacter jejuni (strain
NCTC 11168) gi|6967537|emb|CAB72525.1| putative type IIS
restriction /modification enzyme, C-terminal half
[Campylobacter jejuni subsp. jejuni NCTC 11168]
Length = 386
Score = 32.3 bits (72), Expect = 8.1
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 1/78 (1%)
Frame = -3
Query: 480 LALHLRHFQDLKIQGSEKENSGKKIQLSLHLIFFAEQK*NTIVWRTLLV-ACLVHEK*KT 304
L+ L H + +G K+ S K + ++ ++ E + IVW + AC V++
Sbjct: 212 LSQFLPHIEQSGEKGCRKKTSNKWFETQDNIAYYEEFEKEKIVWAEMTKEACFVYDNSNF 271
Query: 303 SIDQ*SIQFQFCQHRYLL 250
+Q F C ++YLL
Sbjct: 272 FTNQTCYFFTHCDYKYLL 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,624,031
Number of Sequences: 1393205
Number of extensions: 12393939
Number of successful extensions: 38774
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38577
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39495713322
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
