Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001110A_C01 KMC001110A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181524.1| hypothetical protein; protein id: At2g39950.1 [... 43 0.003
gb|EAA23887.1| FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY [Fuso... 34 1.8
gb|ZP_00058707.1| hypothetical protein [Thermobifida fusca] 33 2.3
ref|NP_627157.1| putative ABC transporter ATP-binding protein [S... 32 5.2
emb|CAB60077.1| 2-isopropylmalate synthase [Synechococcus sp. PC... 32 6.8
>ref|NP_181524.1| hypothetical protein; protein id: At2g39950.1 [Arabidopsis
thaliana] gi|25408647|pir||D84823 hypothetical protein
At2g39950 [imported] - Arabidopsis thaliana
gi|2088648|gb|AAB95280.1| hypothetical protein
[Arabidopsis thaliana]
Length = 636
Score = 43.1 bits (100), Expect = 0.003
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Frame = -1
Query: 616 VNPLIPESDAVV-KGARETLRMLLSGSSQGPVMDPLPAILTSPDDNRNVLVTGSRGLYTG 440
+ PL E+D++V KGARETLR+L+SG++ A ++P ++ GSRGLY+
Sbjct: 545 IPPLPVENDSLVEKGARETLRLLISGAN---------ATTSTPLNHH-----GSRGLYSV 590
Query: 439 TRDINVIANSIAAMGF--VSQISHGDNEGDS 353
+RD++ + + A +G S + GD G+S
Sbjct: 591 SRDVSGV-SLFAPIGLQQPSSVEGGDGGGES 620
>gb|EAA23887.1| FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 1227
Score = 33.9 bits (76), Expect = 1.8
Identities = 31/109 (28%), Positives = 47/109 (42%), Gaps = 6/109 (5%)
Frame = -1
Query: 577 GARETLRMLLSGSSQG-----PVMDPLPAILTSPDDNRNVLVTGSRGLYTGTRDINVIAN 413
G + +L++ S G P +P P+I S D++ LVTG+ T ++ V N
Sbjct: 393 GNTNNIGILINSGSTGTVGAVPPGNPAPSIEVSGDNSTGALVTGAGSSLTMKGNVTVSGN 452
Query: 412 SIAAMGFVSQISHGDNEGDSEV-CGNYGIMGTFMNPNDSGGALTDDEGG 269
SI G V+ + EGD+ V N G +N S G + G
Sbjct: 453 SIT--GIVANGTTVKLEGDATVKVDNNGAEAGEINKKGSYGIVVKGSAG 499
>gb|ZP_00058707.1| hypothetical protein [Thermobifida fusca]
Length = 260
Score = 33.5 bits (75), Expect = 2.3
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Frame = +3
Query: 399 MAAMLFAITLISLVP--V*RPRLPVTSTFRLSSGLVKIAGKGSITGPWL 539
+A M+ + +I+L P P LP+++ L+SG+V G G + PWL
Sbjct: 64 VAVMVGLVGIITLFPHGADSPMLPLSAAVTLASGVVAAGGVGYLVAPWL 112
>ref|NP_627157.1| putative ABC transporter ATP-binding protein [Streptomyces
coelicolor A3(2)] gi|7480375|pir||T36154 probable
ABC-type transport system ATP-binding protein -
Streptomyces coelicolor gi|5531380|emb|CAB51012.1|
putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 424
Score = 32.3 bits (72), Expect = 5.2
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 520 DPLPAILTSPDDNRNVLVTGSRGLYTGTRDINVIANSIAAMGFVSQISHGDNEGDSE 350
D L A+LT D+ V VTG RG Y G D+ + NS+ + ++ +++ D E
Sbjct: 349 DALEAVLT--DNAGRVAVTGRRGAYEGVVDMETLMNSVHELLEADRLDALEHQHDLE 403
>emb|CAB60077.1| 2-isopropylmalate synthase [Synechococcus sp. PCC 6301]
Length = 268
Score = 32.0 bits (71), Expect = 6.8
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -1
Query: 526 VMDPLPAILTSPDDNRNVLVTGSRGLYTGTRDINVIANSIAAMGFVSQISHGDNEGDSEV 347
V+D P++ +PD L G++T +AN+IAA+ +++ HG G E
Sbjct: 199 VLDRFPSL--APDQTGPQL-----GIHTHNDSETAVANAIAAVQAGARMVHGTINGYGER 251
Query: 346 CGNYGIMGTFMN 311
CGN + N
Sbjct: 252 CGNANLCSVIPN 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,106,192
Number of Sequences: 1393205
Number of extensions: 13214983
Number of successful extensions: 31613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31600
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
