Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001109A_C01 KMC001109A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00062.1|AF200375_1 cytochrome oxidase subunit I (COI) [Cer... 33 2.3
gb|AAK13227.1| cytochrome oxidase subunit I [Ceratosolen bisulca... 33 2.3
gb|AAK00083.1|AF200388_1 cytochrome oxidase subunit I (COI) [Cer... 33 3.0
ref|NP_593133.1| very hypothetical protein [Schizosaccharomyces ... 33 3.9
gb|AAK13226.1| cytochrome oxidase subunit I [Ceratosolen vetustus] 32 5.0
>gb|AAK00062.1|AF200375_1 cytochrome oxidase subunit I (COI) [Ceratosolen bisulcatus]
Length = 521
Score = 33.5 bits (75), Expect = 2.3
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 114 WSKIENLRAMPMGVXTVKFKKITLQGXTKKRSFNFTFTYNMSLEI*WLYPP 266
W+K+ +L +M + T F I L+G R F+ N+SLE YPP
Sbjct: 431 WNKLSSLGSMLSFLSTAFFFGIVLEGILSNRKLIFSGKMNISLEWMMTYPP 481
>gb|AAK13227.1| cytochrome oxidase subunit I [Ceratosolen bisulcatus]
Length = 272
Score = 33.5 bits (75), Expect = 2.3
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 114 WSKIENLRAMPMGVXTVKFKKITLQGXTKKRSFNFTFTYNMSLEI*WLYPP 266
W+K+ +L +M + T F I L+G R F+ N+SLE YPP
Sbjct: 209 WNKLSSLGSMLSFLSTAFFFGIVLEGLLSNRKLIFSGKMNISLEWMMTYPP 259
>gb|AAK00083.1|AF200388_1 cytochrome oxidase subunit I (COI) [Ceratosolen hooglandi]
Length = 523
Score = 33.1 bits (74), Expect = 3.0
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = +3
Query: 114 WSKIENLRAMPMGVXTVKFKKITLQGXTKKRSFNFTFTYNMSLEI*WLYPP 266
W+K+ ++ AM V T F I L+ R F+ N+SLE YPP
Sbjct: 432 WNKLSSMGAMLSFVSTTFFFGIVLEALISNRKLIFSTKMNISLEWMMTYPP 482
>ref|NP_593133.1| very hypothetical protein [Schizosaccharomyces pombe]
gi|13311184|emb|CAC34405.1| very hypothetical protein
[Schizosaccharomyces pombe]
Length = 104
Score = 32.7 bits (73), Expect = 3.9
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -3
Query: 462 CTRKYCLGTQTLTGFMLYTSACVLGSY*HFEPCSAATLKAFHRSSTRSRSRPTSLCYAGY 283
C Y + T TG +YTS C PC LK + +T+S S P S + Y
Sbjct: 40 CRNSYTVNNGTFTGRQIYTSICKS----RIPPC----LKGKNGKTTKSESEPMSQKHLKY 91
Query: 282 VPK 274
V K
Sbjct: 92 VKK 94
>gb|AAK13226.1| cytochrome oxidase subunit I [Ceratosolen vetustus]
Length = 272
Score = 32.3 bits (72), Expect = 5.0
Identities = 18/51 (35%), Positives = 24/51 (46%)
Frame = +3
Query: 114 WSKIENLRAMPMGVXTVKFKKITLQGXTKKRSFNFTFTYNMSLEI*WLYPP 266
W+K+ +L AM T F I L+ R F+ N+SLE YPP
Sbjct: 209 WNKLSSLGAMMSFFSTAFFFGIVLEALLSNRKLIFSTKMNISLEWMMTYPP 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,879,999
Number of Sequences: 1393205
Number of extensions: 10590290
Number of successful extensions: 21636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21606
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
