Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001108A_C01 KMC001108A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200567.1| adenosylmethionine-8-amino-7-oxononanoate amino... 189 3e-47
ref|ZP_00115009.1| hypothetical protein [Synechococcus sp. WH 8102] 52 4e-06
gb|ZP_00113776.1| hypothetical protein [Prochlorococcus marinus ... 52 7e-06
ref|ZP_00061728.1| hypothetical protein [Clostridium thermocellu... 51 1e-05
gb|ZP_00044897.1| hypothetical protein [Magnetococcus sp. MC-1] 50 3e-05
>ref|NP_200567.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like
protein; protein id: At5g57590.1 [Arabidopsis thaliana]
gi|9758320|dbj|BAB08794.1|
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase-like protein [Arabidopsis thaliana]
Length = 523
Score = 189 bits (479), Expect = 3e-47
Identities = 88/130 (67%), Positives = 106/130 (80%)
Frame = -1
Query: 590 SYSAHAMGCMAAVKSIRWFKDPCSNTNITSEGRLLRELWDDKMVHQISSHPVVQRVVTLG 411
SYSAHAMGC A K+I+WFKDP +N NITS+G+ LRELWD+++V QISSH VQRVV +G
Sbjct: 392 SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIG 451
Query: 410 TLFALELKAEGDNAGYGSLFARPILQKLREDGVYMRPLGNVIYLLSGPCTSPETCNELLV 231
TLFALELKA+ N+GY SL+A+ +L LREDG++ RPLGNVIYL+ GPCTSPE C LL
Sbjct: 452 TLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLT 511
Query: 230 KLYYRLKEFS 201
KLY RL EF+
Sbjct: 512 KLYKRLGEFN 521
>ref|ZP_00115009.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 436
Score = 52.4 bits (124), Expect = 4e-06
Identities = 38/112 (33%), Positives = 55/112 (48%), Gaps = 1/112 (0%)
Frame = -1
Query: 590 SYSAHAMGCMAAVKSIRWFK-DPCSNTNITSEGRLLRELWDDKMVHQISSHPVVQRVVTL 414
S++A+ +GC AA S+ + DP + R + Q+ +HP V R
Sbjct: 316 SFTANPLGCAAANASLDLLQQDPDQFRGFEARHR--------PHLEQLRAHPNVTRCRLT 367
Query: 413 GTLFALELKAEGDNAGYGSLFARPILQKLREDGVYMRPLGNVIYLLSGPCTS 258
GT+ A +L GD AGY + I + E GV++RPLG V+YLL C S
Sbjct: 368 GTVAAFDLSVSGD-AGYLNPAGPTIKRIALEHGVFLRPLGQVVYLLPPLCIS 418
>gb|ZP_00113776.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 442
Score = 51.6 bits (122), Expect = 7e-06
Identities = 35/110 (31%), Positives = 58/110 (51%), Gaps = 1/110 (0%)
Frame = -1
Query: 590 SYSAHAMGCMAAVKSIRWFK-DPCSNTNITSEGRLLRELWDDKMVHQISSHPVVQRVVTL 414
S++A+ +GC AA S+ + +P S N + R + ++ HP VQ+
Sbjct: 322 SFTANPLGCAAANASLDLLEANPESYENFEARHR--------PHLEALAEHPKVQQPRLT 373
Query: 413 GTLFALELKAEGDNAGYGSLFARPILQKLREDGVYMRPLGNVIYLLSGPC 264
GT+ A +L +G + GY + R + Q+ +GV++RPLG V+YLL C
Sbjct: 374 GTIAAFDLAIDGTH-GYLNPAGRIVKQQAINNGVFLRPLGQVVYLLPPLC 422
>ref|ZP_00061728.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 439
Score = 51.2 bits (121), Expect = 1e-05
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Frame = -1
Query: 590 SYSAHAMGCMAAVKSIRWFKDPCSNTNITSEGRLLRELWDDKMVHQISSHPVVQRVVTLG 411
SY+ + + C AA++S++ F+D + L R+L + + H SHP V +G
Sbjct: 300 SYTGNPLACAAALESLKIFEDDDVLNKNREKSGLFRKL-AESLAH---SHPYVGEFRQIG 355
Query: 410 TLFALEL---KAEGDNAGYGSLFARPILQKLREDGVYMRPLGNVIYLLSGPCTSPETCNE 240
+ ALEL KA+ + I + + G+ +RPLGNV+Y + + +
Sbjct: 356 MIAALELVENKAQKKEFDWKKRVGYNIYKLALKKGLLLRPLGNVLYFMPPYVVGQKDIED 415
Query: 239 LLVKLYYRLKEFSG 198
++ +Y + E+ G
Sbjct: 416 IVSGAFYAINEYFG 429
>gb|ZP_00044897.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 437
Score = 49.7 bits (117), Expect = 3e-05
Identities = 33/111 (29%), Positives = 55/111 (48%)
Frame = -1
Query: 590 SYSAHAMGCMAAVKSIRWFKDPCSNTNITSEGRLLRELWDDKMVHQISSHPVVQRVVTLG 411
S++A+ +GC+AA+ S+ F+ S I L ++ + H + P V G
Sbjct: 315 SFTANPLGCVAALASLELFEQEGSLARIGQIAALHQQRLEPLQKHAKAVRPRV-----CG 369
Query: 410 TLFALELKAEGDNAGYGSLFARPILQKLREDGVYMRPLGNVIYLLSGPCTS 258
++ A++L+ + GYG+ + E G+ MRPLGN +YLL C S
Sbjct: 370 SIGAIDLRVA--DGGYGAEIGPKLKAFFIEKGLLMRPLGNTVYLLPPYCVS 418
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,183,049
Number of Sequences: 1393205
Number of extensions: 9328744
Number of successful extensions: 18799
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 18520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18777
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
