Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001106A_C01 KMC001106A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62777.1| Hypothetical protein [Oryza sativa (japonica cult... 123 1e-27
ref|NP_196066.1| putative protein; protein id: At5g04460.1 [Arab... 87 1e-16
dbj|BAC65948.1| OSJNBb0055I24.16 [Oryza sativa (japonica cultiva... 87 1e-16
ref|NP_181038.1| hypothetical protein; protein id: At2g34920.1 [... 80 1e-14
ref|NP_199282.1| putative protein; protein id: At5g44690.1 [Arab... 78 7e-14
>gb|AAN62777.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 957
Score = 123 bits (309), Expect = 1e-27
Identities = 56/93 (60%), Positives = 68/93 (72%)
Frame = -3
Query: 516 CMDMPLELQRSIRPEVSXALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESHIDSL 337
CM+M +ELQRSI+ EVS ALNRS + DG S+W+ RKG CC+CC+ IDSL
Sbjct: 551 CMEMQMELQRSIKQEVSAALNRSLAVPAGEEGMLEDG-SEWKLARKGTCCICCDRQIDSL 609
Query: 336 LYRCGHLCTCSKCANELLPNGRKCPMCPAPVVE 238
LYRCGH+CTCSKCA+ELL KCP+C AP+VE
Sbjct: 610 LYRCGHMCTCSKCASELLHGVGKCPLCRAPIVE 642
>ref|NP_196066.1| putative protein; protein id: At5g04460.1 [Arabidopsis thaliana]
gi|11358334|pir||T48442 hypothetical protein T32M21.60 -
Arabidopsis thaliana gi|7406450|emb|CAB85552.1| putative
protein [Arabidopsis thaliana]
Length = 831
Score = 86.7 bits (213), Expect = 1e-16
Identities = 42/63 (66%), Positives = 47/63 (73%)
Frame = -3
Query: 516 CMDMPLELQRSIRPEVSXALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESHIDSL 337
CMDM LELQRS+R EVS ALNRSAG G S DG S+W V KG CCVCC++HID+L
Sbjct: 770 CMDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDG-SRWSHVSKGTCCVCCDNHIDAL 828
Query: 336 LYR 328
LYR
Sbjct: 829 LYR 831
>dbj|BAC65948.1| OSJNBb0055I24.16 [Oryza sativa (japonica cultivar-group)]
Length = 826
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/98 (40%), Positives = 63/98 (63%)
Frame = -3
Query: 516 CMDMPLELQRSIRPEVSXALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESHIDSL 337
C+ +++Q SI+ E+ AL R AG + PD +K +G CC+C ++ +DSL
Sbjct: 736 CIASQVKIQHSIKEEMCSAL-REAGLMPSQ----PDTPAK-----RGSCCICHQTQVDSL 785
Query: 336 LYRCGHLCTCSKCANELLPNGRKCPMCPAPVVEVIRAY 223
LYRCGH+CTC CA++L + R CP+C +P+ +V+RA+
Sbjct: 786 LYRCGHMCTCFNCADQLKSSNRSCPICQSPIEDVVRAH 823
>ref|NP_181038.1| hypothetical protein; protein id: At2g34920.1 [Arabidopsis
thaliana] gi|7485803|pir||T00474 hypothetical protein
At2g34920 [imported] - Arabidopsis thaliana
gi|3033388|gb|AAC12832.1| hypothetical protein
[Arabidopsis thaliana]
Length = 785
Score = 80.5 bits (197), Expect = 1e-14
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Frame = -3
Query: 501 LELQRS-IRPEVSXALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESHIDSLLYRC 325
L+L+ S +R V L+ +A + E+P K CCVC E+ +++LLYRC
Sbjct: 696 LQLEMSELRDSVKTCLDVNASLQKSVHLENPF---------KRKCCVCNETQVETLLYRC 746
Query: 324 GHLCTCSKCANELLPNGRKCPMCPAPVVEVIRAY 223
GH+CTC +CANEL NG KCP+C A +++V+R +
Sbjct: 747 GHMCTCLRCANELQYNGGKCPICHAKILDVVRVF 780
>ref|NP_199282.1| putative protein; protein id: At5g44690.1 [Arabidopsis thaliana]
gi|9758373|dbj|BAB08822.1|
gene_id:K23L20.2~pir||T00474~similar to unknown protein
[Arabidopsis thaliana]
Length = 684
Score = 77.8 bits (190), Expect = 7e-14
Identities = 31/50 (62%), Positives = 40/50 (80%)
Frame = -3
Query: 372 CCVCCESHIDSLLYRCGHLCTCSKCANELLPNGRKCPMCPAPVVEVIRAY 223
C +C E IDSLLYRCGH+CTC KCA+EL + KCP+C AP+V+V+RA+
Sbjct: 632 CSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPIVDVVRAF 681
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,444,695
Number of Sequences: 1393205
Number of extensions: 10154205
Number of successful extensions: 35662
Number of sequences better than 10.0: 587
Number of HSP's better than 10.0 without gapping: 34081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35504
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
