Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001104A_C02 KMC001104A_c02
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567217.1| protein transport protein-related; protein id: ... 178 6e-44
gb|AAK59590.1| putative protein transport factor [Arabidopsis th... 178 6e-44
dbj|BAB21230.1| P0426D06.10 [Oryza sativa (japonica cultivar-gro... 176 3e-43
pir||C85023 hypothetical protein AT4g01810 [imported] - Arabidop... 119 3e-26
ref|NP_587900.1| protein transport protein sec23 homolog [Schizo... 35 0.86
>ref|NP_567217.1| protein transport protein-related; protein id: At4g01810.1, supported
by cDNA: gi_14334823 [Arabidopsis thaliana]
gi|27754215|gb|AAO22561.1| putative protein transport
factor [Arabidopsis thaliana]
Length = 880
Score = 178 bits (451), Expect = 6e-44
Identities = 87/101 (86%), Positives = 90/101 (88%)
Frame = -3
Query: 644 EGKSAAALAACRKLAEELTEFRFPAPRILAFKEASSQARYFVSRLIPAHKDPPYEQEARF 465
E KSAA LAACR LAEELTEFRFPAPRILAFKE SSQARYFV RLIPAHKDPPYEQEARF
Sbjct: 780 EVKSAAVLAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVCRLIPAHKDPPYEQEARF 839
Query: 464 PQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPPPR 342
PQ+RTLT E R KLKSSF+ FD+ SFCEWMRSLKVVPP PR
Sbjct: 840 PQIRTLTTEQRMKLKSSFIEFDEASFCEWMRSLKVVPPEPR 880
>gb|AAK59590.1| putative protein transport factor [Arabidopsis thaliana]
Length = 880
Score = 178 bits (451), Expect = 6e-44
Identities = 87/101 (86%), Positives = 90/101 (88%)
Frame = -3
Query: 644 EGKSAAALAACRKLAEELTEFRFPAPRILAFKEASSQARYFVSRLIPAHKDPPYEQEARF 465
E KSAA LAACR LAEELTEFRFPAPRILAFKE SSQARYFV RLIPAHKDPPYEQEARF
Sbjct: 780 EVKSAAVLAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVCRLIPAHKDPPYEQEARF 839
Query: 464 PQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPPPR 342
PQ+RTLT E R KLKSSF+ FD+ SFCEWMRSLKVVPP PR
Sbjct: 840 PQIRTLTTEQRMKLKSSFIEFDEASFCEWMRSLKVVPPEPR 880
>dbj|BAB21230.1| P0426D06.10 [Oryza sativa (japonica cultivar-group)]
Length = 865
Score = 176 bits (445), Expect = 3e-43
Identities = 84/100 (84%), Positives = 92/100 (92%)
Frame = -3
Query: 644 EGKSAAALAACRKLAEELTEFRFPAPRILAFKEASSQARYFVSRLIPAHKDPPYEQEARF 465
EG+SAAALAACR LAEEL+E RFPAPRIL+FKE SSQARYFVSRLIPAHKDP YEQE+RF
Sbjct: 765 EGQSAAALAACRTLAEELSELRFPAPRILSFKEGSSQARYFVSRLIPAHKDPTYEQESRF 824
Query: 464 PQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPPP 345
PQLRTLT E R++LKSSF+HFDD SFCEWMRSLK+VPP P
Sbjct: 825 PQLRTLTPEQRSRLKSSFIHFDDHSFCEWMRSLKLVPPEP 864
>pir||C85023 hypothetical protein AT4g01810 [imported] - Arabidopsis thaliana
gi|4558550|gb|AAD22643.1|AC007138_7 putative protein
transport factor [Arabidopsis thaliana]
gi|7268565|emb|CAB80674.1| putative protein transport
factor [Arabidopsis thaliana]
Length = 856
Score = 119 bits (299), Expect = 3e-26
Identities = 65/101 (64%), Positives = 68/101 (66%)
Frame = -3
Query: 644 EGKSAAALAACRKLAEELTEFRFPAPRILAFKEASSQARYFVSRLIPAHKDPPYEQEARF 465
E KSAA LAACR LAEELTEFRFPAPRILAFKEA RF
Sbjct: 780 EVKSAAVLAACRTLAEELTEFRFPAPRILAFKEA------------------------RF 815
Query: 464 PQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPPPR 342
PQ+RTLT E R KLKSSF+ FD+ SFCEWMRSLKVVPP PR
Sbjct: 816 PQIRTLTTEQRMKLKSSFIEFDEASFCEWMRSLKVVPPEPR 856
>ref|NP_587900.1| protein transport protein sec23 homolog [Schizosaccharomyces pombe]
gi|7493220|pir||T41295 protein transport protein sec23
homolog - fission yeast (Schizosaccharomyces pombe)
gi|3702631|emb|CAA21224.1| protein transport protein
sec23 homolog [Schizosaccharomyces pombe]
Length = 759
Score = 35.0 bits (79), Expect = 0.86
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = -3
Query: 623 LAACRKLAEELTEFRFPAPRILAFKEASSQARYFVSRLIPA 501
L A R A EL RFP PR + + SQAR+ +SRL P+
Sbjct: 680 LEAPRVEAAELLIDRFPIPRFIVCDQGGSQARFLLSRLNPS 720
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,049,785
Number of Sequences: 1393205
Number of extensions: 12757218
Number of successful extensions: 32999
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 31923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32982
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
