Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001103A_C01 KMC001103A_c01
(950 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186795.1| unknown protein; protein id: At3g01460.1 [Arabi... 187 2e-51
gb|AAF01531.1|AC009325_1 unknown protein [Arabidopsis thaliana] 70 1e-16
ref|XP_218939.1| similar to HBV pX associated protein 8 large is... 73 6e-12
ref|XP_133622.1| similar to HBV pX associated protein-8; hepatit... 73 6e-12
ref|NP_596174.1| putative transcriptional regulatory protein, ph... 72 1e-11
>ref|NP_186795.1| unknown protein; protein id: At3g01460.1 [Arabidopsis thaliana]
gi|6692266|gb|AAF24616.1|AC010870_9 unknown protein
[Arabidopsis thaliana]
Length = 2176
Score = 187 bits (475), Expect(2) = 2e-51
Identities = 85/173 (49%), Positives = 113/173 (65%)
Frame = +1
Query: 91 ESPWDEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHAT 270
++PWDEGVCKVCG+DKDDDSVLLCDTCDAEYHTYCLNPPL RIP+GNWYCPSCV K
Sbjct: 1282 KAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIAKRMA 1341
Query: 271 QNVIEHSQIIGKRRSKKFLGEVNRLNLEALTHLSTVVEEKEYWEYSVAERTFLLKFLCDE 450
Q +E +++ +R+ +K+ GE+ R ++E HL+ V+EEK+YWE+S ER LLK LCDE
Sbjct: 1342 QEALESYKLVRRRKGRKYQGELTRASMELTAHLADVMEEKDYWEFSAEERILLLKLLCDE 1401
Query: 451 CLTLP*YASTLSNVLTCLLSYIRNCVHYLLSGKT*KLKRTFYPQKLQNLIHSL 609
L+ L ++ + K K+++ F KL + S+
Sbjct: 1402 LLSSSLVHQHLEQCAEAIIEMQQKLRSLSSEWKNAKMRQEFLTAKLAKVEPSI 1454
Score = 67.8 bits (164), Expect = 2e-10
Identities = 48/158 (30%), Positives = 75/158 (47%)
Frame = +3
Query: 450 VLNSSLIRQHLEQCADLSVELHQKLRALSVEWKNLKTKEDILSTKAAKLDTFSLNTAGEV 629
+L+SSL+ QHLEQCA+ +E+ QKLR+LS EWKN K +++ L+ K AK++ L
Sbjct: 1402 LLSSSLVHQHLEQCAEAIIEMQQKLRSLSSEWKNAKMRQEFLTAKLAKVEPSIL------ 1455
Query: 630 GLKEGLQALFSNSGKCLGQPHTAADNPSSFGVFVDSLPSEEITKEKYRFHSVDKSVSMTN 809
K +G+PH ++ G D P E + R D S T
Sbjct: 1456 --------------KEVGEPHNSSYFADQMG--CDPQPQEGVGDGVTR----DDETSSTA 1495
Query: 810 SDSDSQNMNSIDGEVQRNVSVAVESQCTDKSPKSCSSP 923
+ +Q + ++ + Q S + SP++ SSP
Sbjct: 1496 YLNKNQGKSPLETDTQPGESHVNFGESKISSPETISSP 1533
Score = 44.3 bits (103), Expect = 0.003
Identities = 16/54 (29%), Positives = 26/54 (47%)
Frame = +1
Query: 97 PWDEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDG 258
P + C CG + + V++CD C+ +H C+N + P +W C C G
Sbjct: 80 PDRDASCGACGRPESIELVVVCDACERGFHMSCVNDGVEAAPSADWMCSDCRTG 133
Score = 38.5 bits (88), Expect(2) = 2e-51
Identities = 14/26 (53%), Positives = 22/26 (83%)
Frame = +2
Query: 23 MECLNAEMKKEVDGFIASISEIPKAP 100
+ECL+AEMKKE+ + S++++PKAP
Sbjct: 1259 LECLSAEMKKEIKDIVVSVNKLPKAP 1284
>gb|AAF01531.1|AC009325_1 unknown protein [Arabidopsis thaliana]
Length = 947
Score = 70.5 bits (171), Expect(2) = 1e-16
Identities = 38/132 (28%), Positives = 65/132 (48%)
Frame = +1
Query: 214 RIPEGNWYCPSCVDGKHATQNVIEHSQIIGKRRSKKFLGEVNRLNLEALTHLSTVVEEKE 393
++P+ W D Q +E +++ +R+ +K+ GE+ R ++E HL+ V+EEK+
Sbjct: 100 KLPKAPW------DEGRMAQEALESYKLVRRRKGRKYQGELTRASMELTAHLADVMEEKD 153
Query: 394 YWEYSVAERTFLLKFLCDECLTLP*YASTLSNVLTCLLSYIRNCVHYLLSGKT*KLKRTF 573
YWE+S ER LLK LCDE L+ L ++ + K K+++ F
Sbjct: 154 YWEFSAEERILLLKLLCDELLSSSLVHQHLEQCAEAIIEMQQKLRSLSSEWKNAKMRQEF 213
Query: 574 YPQKLQNLIHSL 609
KL + S+
Sbjct: 214 LTAKLAKVEPSI 225
Score = 67.8 bits (164), Expect = 2e-10
Identities = 48/158 (30%), Positives = 75/158 (47%)
Frame = +3
Query: 450 VLNSSLIRQHLEQCADLSVELHQKLRALSVEWKNLKTKEDILSTKAAKLDTFSLNTAGEV 629
+L+SSL+ QHLEQCA+ +E+ QKLR+LS EWKN K +++ L+ K AK++ L
Sbjct: 173 LLSSSLVHQHLEQCAEAIIEMQQKLRSLSSEWKNAKMRQEFLTAKLAKVEPSIL------ 226
Query: 630 GLKEGLQALFSNSGKCLGQPHTAADNPSSFGVFVDSLPSEEITKEKYRFHSVDKSVSMTN 809
K +G+PH ++ G D P E + R D S T
Sbjct: 227 --------------KEVGEPHNSSYFADQMG--CDPQPQEGVGDGVTR----DDETSSTA 266
Query: 810 SDSDSQNMNSIDGEVQRNVSVAVESQCTDKSPKSCSSP 923
+ +Q + ++ + Q S + SP++ SSP
Sbjct: 267 YLNKNQGKSPLETDTQPGESHVNFGESKISSPETISSP 304
Score = 38.5 bits (88), Expect(2) = 1e-16
Identities = 14/26 (53%), Positives = 22/26 (83%)
Frame = +2
Query: 23 MECLNAEMKKEVDGFIASISEIPKAP 100
+ECL+AEMKKE+ + S++++PKAP
Sbjct: 80 LECLSAEMKKEIKDIVVSVNKLPKAP 105
>ref|XP_218939.1| similar to HBV pX associated protein 8 large isoform [Homo sapiens]
[Rattus norvegicus]
Length = 1552
Score = 73.2 bits (178), Expect = 6e-12
Identities = 28/51 (54%), Positives = 35/51 (67%)
Frame = +1
Query: 97 PWDEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSC 249
P D+ CK CGL + +LLCD+CD+ YHT CL PPL IP+G W+CP C
Sbjct: 1019 PDDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPC 1069
>ref|XP_133622.1| similar to HBV pX associated protein-8; hepatitis B
virus-associated protein [Homo sapiens] [Mus musculus]
Length = 748
Score = 73.2 bits (178), Expect = 6e-12
Identities = 28/51 (54%), Positives = 35/51 (67%)
Frame = +1
Query: 97 PWDEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSC 249
P D+ CK CGL + +LLCD+CD+ YHT CL PPL IP+G W+CP C
Sbjct: 198 PDDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPC 248
>ref|NP_596174.1| putative transcriptional regulatory protein, phd finger.
[Schizosaccharomyces pombe] gi|12044483|emb|CAC19756.1|
putative transcriptional regulatory protein, phd finger.
[Schizosaccharomyces pombe]
Length = 1513
Score = 72.4 bits (176), Expect = 1e-11
Identities = 26/45 (57%), Positives = 36/45 (79%)
Frame = +1
Query: 115 CKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSC 249
C+ CGLDK+ +++LLCD C+A YHT CL+PPL IP+ +WYC +C
Sbjct: 271 CEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPKEDWYCDAC 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 809,488,627
Number of Sequences: 1393205
Number of extensions: 17832629
Number of successful extensions: 56646
Number of sequences better than 10.0: 566
Number of HSP's better than 10.0 without gapping: 52208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56152
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53523731176
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
