Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001100A_C01 KMC001100A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564530.1| expressed protein; protein id: At1g48520.1, sup... 132 4e-30
gb|AAF79700.1|AC020889_8 T1N15.14 [Arabidopsis thaliana] 114 1e-24
ref|NP_683184.1| Glu-tRNA(Gln) amidotransferase subunit B [Therm... 97 2e-19
ref|ZP_00075170.1| hypothetical protein [Trichodesmium erythraeu... 92 4e-18
ref|ZP_00073753.1| hypothetical protein [Trichodesmium erythraeu... 92 4e-18
>ref|NP_564530.1| expressed protein; protein id: At1g48520.1, supported by cDNA:
gi_11078539, supported by cDNA: gi_15809910, supported
by cDNA: gi_18377820 [Arabidopsis thaliana]
gi|11078540|gb|AAG29096.1|AF239836_1 Glu-tRNA(Gln)
amidotransferase subunit B [Arabidopsis thaliana]
gi|15809911|gb|AAL06883.1| At1g48520/T1N15_12
[Arabidopsis thaliana] gi|18377821|gb|AAL67097.1|
At1g48520/T1N15_12 [Arabidopsis thaliana]
Length = 550
Score = 132 bits (332), Expect = 4e-30
Identities = 64/79 (81%), Positives = 74/79 (93%)
Frame = -2
Query: 625 GGSVKELIEKKDLVQIADPAEIEKMVDKVIAENPKQVEQYRGGKTKLQGFFAGQVMKLSK 446
GG+VK +I+ KDLVQI DPAEIEKMV +V++ENPKQ+EQYR GKTKLQG+FAGQVMK+SK
Sbjct: 471 GGTVKGMIKAKDLVQITDPAEIEKMVIQVVSENPKQLEQYRSGKTKLQGYFAGQVMKMSK 530
Query: 445 GKANPGLLNKILLEKLNSK 389
GKANPGLLNKILLEKLN+K
Sbjct: 531 GKANPGLLNKILLEKLNAK 549
>gb|AAF79700.1|AC020889_8 T1N15.14 [Arabidopsis thaliana]
Length = 618
Score = 114 bits (284), Expect = 1e-24
Identities = 54/65 (83%), Positives = 62/65 (95%)
Frame = -2
Query: 583 QIADPAEIEKMVDKVIAENPKQVEQYRGGKTKLQGFFAGQVMKLSKGKANPGLLNKILLE 404
+I DPAEIEKMV +V++ENPKQ+EQYR GKTKLQG+FAGQVMK+SKGKANPGLLNKILLE
Sbjct: 553 EITDPAEIEKMVIQVVSENPKQLEQYRSGKTKLQGYFAGQVMKMSKGKANPGLLNKILLE 612
Query: 403 KLNSK 389
KLN+K
Sbjct: 613 KLNAK 617
>ref|NP_683184.1| Glu-tRNA(Gln) amidotransferase subunit B [Thermosynechococcus
elongatus BP-1] gi|22296122|dbj|BAC09946.1|
Glu-tRNA(Gln) amidotransferase subunit B
[Thermosynechococcus elongatus BP-1]
Length = 500
Score = 96.7 bits (239), Expect = 2e-19
Identities = 46/80 (57%), Positives = 62/80 (77%)
Frame = -2
Query: 625 GGSVKELIEKKDLVQIADPAEIEKMVDKVIAENPKQVEQYRGGKTKLQGFFAGQVMKLSK 446
GGS K L+E+K L QI+D A +E M+D+V+A +P ++EQYR GKTKLQGFF GQ+MK S
Sbjct: 421 GGSPKALVERKGLSQISDVATLEAMIDEVLAAHPNELEQYRAGKTKLQGFFVGQLMKKSG 480
Query: 445 GKANPGLLNKILLEKLNSKS 386
G+A+P L N++L +KLN S
Sbjct: 481 GRADPKLANQLLAQKLNPGS 500
>ref|ZP_00075170.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 209
Score = 92.4 bits (228), Expect = 4e-18
Identities = 41/76 (53%), Positives = 63/76 (81%)
Frame = -2
Query: 625 GGSVKELIEKKDLVQIADPAEIEKMVDKVIAENPKQVEQYRGGKTKLQGFFAGQVMKLSK 446
GGS KEL+EKK L+QI+D IE ++D+V+A +P+++ +YRGGKTKL+GFF GQVMK ++
Sbjct: 132 GGSPKELVEKKGLIQISDIKAIEAIIDEVLAAHPEELAKYRGGKTKLKGFFVGQVMKKTQ 191
Query: 445 GKANPGLLNKILLEKL 398
G+A+P + N+++ +KL
Sbjct: 192 GRADPKMTNQLISKKL 207
>ref|ZP_00073753.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 494
Score = 92.4 bits (228), Expect = 4e-18
Identities = 41/76 (53%), Positives = 63/76 (81%)
Frame = -2
Query: 625 GGSVKELIEKKDLVQIADPAEIEKMVDKVIAENPKQVEQYRGGKTKLQGFFAGQVMKLSK 446
GGS KEL+EKK L+QI+D IE ++D+V+A +P+++ +YRGGKTKL+GFF GQVMK ++
Sbjct: 417 GGSPKELVEKKGLIQISDIKAIEAIIDEVLAAHPEELAKYRGGKTKLKGFFVGQVMKKTQ 476
Query: 445 GKANPGLLNKILLEKL 398
G+A+P + N+++ +KL
Sbjct: 477 GRADPKMTNQLISKKL 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,388,682
Number of Sequences: 1393205
Number of extensions: 9884704
Number of successful extensions: 22658
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 21760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22619
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
