Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001099A_C01 KMC001099A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC30549.1| unnamed protein product [Mus musculus] 36 0.31
gb|ZP_00079834.1| hypothetical protein [Geobacter metallireducens] 36 0.31
ref|NP_348417.1| CDP-diglyceride synthetase [Clostridium acetobu... 33 2.0
gb|AAL04149.1|AF410848_1 NR1 [Glycine max] 33 2.6
gb|AAL56987.1|AF327903_1 functional candidate resistance protein... 33 2.6
>dbj|BAC30549.1| unnamed protein product [Mus musculus]
Length = 212
Score = 35.8 bits (81), Expect = 0.31
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = +2
Query: 212 SSKVKEDTVVVMSRSRKVEVDTLVF*WQMETATHHFQI*----YLPCCFLPCRYQQGSSL 379
SS+V TV +RK + T F + + F I YLPC +LPC Y +
Sbjct: 33 SSRVSAPTVARAQLARKNDAATGSFCTHLFSPVSSFSIYLPCLYLPCLYLPCLYLPCFYI 92
Query: 380 MKVQFQPKFLWPLPIQNLVWGISPHIKSQHDSIYSLKMP 496
V P FL+ LP + ISP + H S Y+L P
Sbjct: 93 SLVYISPLFLY-LP----CFYISPEPWASH-SFYTLSHP 125
>gb|ZP_00079834.1| hypothetical protein [Geobacter metallireducens]
Length = 387
Score = 35.8 bits (81), Expect = 0.31
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Frame = -2
Query: 452 EAKYPRPSSELAMA----TETWVGTGLSLS-------WTLVGIYKEGNNKEDIKFENGVS 306
E + PRP S MA + + G G+ + WT+VGI++ GN + V
Sbjct: 135 EGRMPRPGSAEIMAGASIAKRFKGGGIGETLRFGMRDWTVVGIFEAGNTGFSSEIWGDVD 194
Query: 305 QFPSAIRKPVY 273
Q A R+PVY
Sbjct: 195 QLMQAFRRPVY 205
>ref|NP_348417.1| CDP-diglyceride synthetase [Clostridium acetobutylicum]
gi|25496814|pir||B97121 CDP-diglyceride synthetase
[imported] - Clostridium acetobutylicum
gi|15024764|gb|AAK79757.1|AE007688_6 CDP-diglyceride
synthetase [Clostridium acetobutylicum]
Length = 245
Score = 33.1 bits (74), Expect = 2.0
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -1
Query: 153 SLFNHFIVITMSIIVKYLLNYKGVTFCCLLKIFVVKFLCMSAKEAIHSYI 4
S+ + + I +++ Y LNYK V F ++ IF++ LC+ + ++YI
Sbjct: 55 SIVGYLLCIAYYVLINYKLNYKFVLFMIVIGIFIM--LCVPTLDTKYNYI 102
>gb|AAL04149.1|AF410848_1 NR1 [Glycine max]
Length = 175
Score = 32.7 bits (73), Expect = 2.6
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 494 AFSENKWNHVEILCEAKYPRPSSELAMATETWVGTGLSLSWTLVGIYKEGNNKEDIKFEN 315
A EN+WNH E+ C P A T++ TGL + K+ +N EDI+F +
Sbjct: 69 ALLENEWNHAEVTC------PGFTFTFA-PTFIKTGLH-------VLKQESNMEDIRFSD 114
>gb|AAL56987.1|AF327903_1 functional candidate resistance protein KR1 [Glycine max]
Length = 1124
Score = 32.7 bits (73), Expect = 2.6
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 494 AFSENKWNHVEILCEAKYPRPSSELAMATETWVGTGLSLSWTLVGIYKEGNNKEDIKFEN 315
A EN+WNH E+ C P A T++ TGL + K+ +N EDI+F +
Sbjct: 1011 ALLENEWNHAEVTC------PGFTFTFA-PTFIKTGLH-------VLKQESNMEDIRFSD 1056
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,486,016
Number of Sequences: 1393205
Number of extensions: 9978401
Number of successful extensions: 26054
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26006
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
