Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001097A_C01 KMC001097A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46254|HS2M_PEA Heat shock 22 kDa protein, mitochondrial prec... 169 3e-41
sp|Q39818|HS2M_SOYBN Heat shock 22 kDa protein, mitochondrial pr... 151 7e-36
ref|NP_194250.1| Arabidopsis mitochondrion-localized small heat ... 145 5e-34
gb|AAF37726.1|AF237957_1 LMW heat shock protein [Euphorbia esula] 144 1e-33
emb|CAA67022.1| LMW heat shock protein [Arabidopsis thaliana] 143 2e-33
>sp|P46254|HS2M_PEA Heat shock 22 kDa protein, mitochondrial precursor
gi|2129884|pir||S59528 heat shock protein 22 precursor -
garden pea gi|773581|emb|CAA60120.1| heat shock protein
[Pisum sativum]
Length = 202
Score = 169 bits (428), Expect = 3e-41
Identities = 89/123 (72%), Positives = 104/123 (84%), Gaps = 4/123 (3%)
Frame = -1
Query: 675 SQVLNTVDQLKNNP---RGARNGWDARETEDALLLRVNMPGLGKEDVKIAVEQNTLTIRG 505
SQVLN VD L +NP +R GWDARETEDAL LR++MPGLGKEDVKI+VEQNTLTI+G
Sbjct: 80 SQVLNMVDLLTDNPVLSAASRRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKG 139
Query: 504 E-GPKESEEEVGGGLRYTSRIDLPDQLYQIDQIQAEMKNGVLKVTVPKMKEEERSDVFNV 328
E G KESEE+ G R++SRIDLP++LY+ID I+AEMKNGVLKVTVPKMKEEER++V NV
Sbjct: 140 EEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINV 199
Query: 327 TVD 319
VD
Sbjct: 200 KVD 202
>sp|Q39818|HS2M_SOYBN Heat shock 22 kDa protein, mitochondrial precursor
gi|2129837|pir||S65049 heat shock protein hsp23.9
precursor, mitochondrial - soybean
gi|710432|gb|AAB03096.1| Hsp23.9
Length = 211
Score = 151 bits (382), Expect = 7e-36
Identities = 78/105 (74%), Positives = 88/105 (83%)
Frame = -1
Query: 633 RGARNGWDARETEDALLLRVNMPGLGKEDVKIAVEQNTLTIRGEGPKESEEEVGGGLRYT 454
R + GWDARETEDAL LRV+MPGL KEDVKI+VEQNTL I+GEG KE +EE RYT
Sbjct: 108 RWSGRGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESAR-RYT 166
Query: 453 SRIDLPDQLYQIDQIQAEMKNGVLKVTVPKMKEEERSDVFNVTVD 319
SRIDLPD+LY+IDQI+AEMKNGVLKV VPKMKEEER DV +V V+
Sbjct: 167 SRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211
>ref|NP_194250.1| Arabidopsis mitochondrion-localized small heat shock protein
(AtHSP23.6-mito); protein id: At4g25200.1, supported by
cDNA: gi_1669865 [Arabidopsis thaliana]
gi|3122232|sp|Q96331|HS2M_ARATH Heat shock 22 kDa
protein, mitochondrial precursor gi|7441312|pir||T05541
heat shock protein HSP23.6, mitochondrial - Arabidopsis
thaliana gi|1669866|gb|AAB38795.1| AtHSP23.6-mito
[Arabidopsis thaliana] gi|4454008|emb|CAA23061.1|
Arabidopsis mitochondrion-localized small heat shock
protein (AtHSP23.6-mito) [Arabidopsis thaliana]
gi|7269370|emb|CAB79429.1| Arabidopsis
mitochondrion-localized small heat shock protein
(AtHSP23.6-mito) [Arabidopsis thaliana]
gi|26453231|dbj|BAC43689.1| putative
mitochondrion-localized small heat shock protein
[Arabidopsis thaliana] gi|28950739|gb|AAO63293.1|
At4g25200 [Arabidopsis thaliana]
Length = 210
Score = 145 bits (366), Expect = 5e-34
Identities = 74/132 (56%), Positives = 95/132 (71%), Gaps = 13/132 (9%)
Frame = -1
Query: 675 SQVLNTVDQLKNNP----------RGARNGWDARETEDALLLRVNMPGLGKEDVKIAVEQ 526
SQVLN +DQ NP GAR GWD +E +DAL LR++MPGL +EDVK+A+EQ
Sbjct: 79 SQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQ 138
Query: 525 NTLTIRGEGPKES---EEEVGGGLRYTSRIDLPDQLYQIDQIQAEMKNGVLKVTVPKMKE 355
+TL IRGEG E EE G R+TSRI LPD++Y+ID+I+AEMKNGVLKV +PKMKE
Sbjct: 139 DTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKE 198
Query: 354 EERSDVFNVTVD 319
+ER+DV + ++
Sbjct: 199 QERNDVRQIEIN 210
>gb|AAF37726.1|AF237957_1 LMW heat shock protein [Euphorbia esula]
Length = 204
Score = 144 bits (363), Expect = 1e-33
Identities = 72/126 (57%), Positives = 98/126 (77%), Gaps = 7/126 (5%)
Frame = -1
Query: 675 SQVLNTVDQLKNNP-------RGARNGWDARETEDALLLRVNMPGLGKEDVKIAVEQNTL 517
S++LN ++ NP G R WDARETEDAL LRV+MPGL K+DVK++VE+NTL
Sbjct: 80 SRMLNVMEPFIENPFVSRGMSAGIRRNWDARETEDALNLRVDMPGLDKKDVKVSVEKNTL 139
Query: 516 TIRGEGPKESEEEVGGGLRYTSRIDLPDQLYQIDQIQAEMKNGVLKVTVPKMKEEERSDV 337
I+GEG KESE+E G +Y+ RIDLP+++++ D+I+AEMKNGVLKV VPK+KE+ER+DV
Sbjct: 140 IIKGEGEKESEDE-ESGRKYSGRIDLPEKMFKTDEIKAEMKNGVLKVVVPKVKEDERADV 198
Query: 336 FNVTVD 319
F+V ++
Sbjct: 199 FHVKIE 204
>emb|CAA67022.1| LMW heat shock protein [Arabidopsis thaliana]
Length = 210
Score = 143 bits (361), Expect = 2e-33
Identities = 72/132 (54%), Positives = 95/132 (71%), Gaps = 13/132 (9%)
Frame = -1
Query: 675 SQVLNTVDQLKNNP----------RGARNGWDARETEDALLLRVNMPGLGKEDVKIAVEQ 526
SQVLN +DQ NP GAR GWD +E +DAL LR++MPGL +EDVK+A+EQ
Sbjct: 79 SQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQ 138
Query: 525 NTLTIRGEGPKES---EEEVGGGLRYTSRIDLPDQLYQIDQIQAEMKNGVLKVTVPKMKE 355
+TL +RGEG E E+ G R+TSRI LPD++Y+ID+I+AEMKNGVLKV +PKMKE
Sbjct: 139 DTLVLRGEGKNEEDGGEQGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKE 198
Query: 354 EERSDVFNVTVD 319
+ER+DV + ++
Sbjct: 199 QERNDVRQIEIN 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,217,414
Number of Sequences: 1393205
Number of extensions: 12878241
Number of successful extensions: 37927
Number of sequences better than 10.0: 407
Number of HSP's better than 10.0 without gapping: 35625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37541
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
