Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001096A_C01 KMC001096A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174684.1| hypothetical protein; protein id: At1g34220.1 [... 67 2e-10
ref|NP_012905.1| Dosage dependent suppressor of Ty-induced promo... 42 0.004
gb|AAA20575.1| suppressor 42 0.004
gb|ZP_00041732.1| hypothetical protein [Xylella fastidiosa Ann-1] 40 0.027
ref|NP_701443.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.23
>ref|NP_174684.1| hypothetical protein; protein id: At1g34220.1 [Arabidopsis
thaliana] gi|25403418|pir||E86466 protein F23M19.10
[imported] - Arabidopsis thaliana
gi|5091622|gb|AAD39610.1|AC007454_9 F23M19.10
[Arabidopsis thaliana]
Length = 619
Score = 67.0 bits (162), Expect = 2e-10
Identities = 56/168 (33%), Positives = 86/168 (50%), Gaps = 13/168 (7%)
Frame = -1
Query: 580 RAAAAARSAASLAQVRINELTKKKSSEDIPDSSSENPFYAGGDNESRTERGHSPEPNTAG 401
RAA+AARSAASLAQ+RINELT +K+S+ P+S SENPF+A + + +S ++
Sbjct: 373 RAASAARSAASLAQLRINELT-RKTSDQYPESPSENPFHAPSMGNLQFDHQNSSASSSGD 431
Query: 400 MSDVFVREDHEL--HQDHYASPGSHSS-SFPSFDTLKEDFNTSLPGDHVLGDDSSNHQPK 230
++++ E L + + P +HSS P FD F++ GD + P+
Sbjct: 432 LTELQRAETSSLFNSEQNNQQPQTHSSMEKPQFDRQNSSFSS-------YGDLT----PQ 480
Query: 229 RLPSMDDDPYFSYPNLFSSPNSNVGSQ----------DHADNSRSTHD 116
R SM + P F + N S ++ Q DH ++S S +D
Sbjct: 481 RFHSM-EKPQFDHQNSSGSNYDDLTPQRFSSLEKPQFDHQNSSGSNYD 527
Score = 56.2 bits (134), Expect = 3e-07
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = -1
Query: 514 KKSSEDIPDSSSENPFYAGGDNESRTERGHSPEPNTAGMS--DVFVREDHELHQDHYASP 341
+K D +SS N S E+ N++G + D+ + + +
Sbjct: 486 EKPQFDHQNSSGSNYDDLTPQRFSSLEKPQFDHQNSSGSNYDDLTPHRFPSMEKPQFDHQ 545
Query: 340 GSHSSSFPSFDTLKEDFNTSLPGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLFSSP--N 167
S SS+ L+ + L D + D +HQ RLPSM+DDPY+SYPNLF+S +
Sbjct: 546 NSSVSSYGDLPELQRPETSPL--DRLSPDQ--DHQQMRLPSMEDDPYYSYPNLFTSQKHD 601
Query: 166 SNVGSQDHADNSRSTHD 116
+ GS +DN+R HD
Sbjct: 602 PSSGSHSFSDNTRPAHD 618
>ref|NP_012905.1| Dosage dependent suppressor of Ty-induced promoter mutations.
Homolog of Mga2. Spt23p and Mga2p differentially
activate and regulate OLE1 transcription.; Spt23p
[Saccharomyces cerevisiae]
gi|548965|sp|P35210|SP23_YEAST SPT23 protein
gi|539369|pir||S37837 suppressor protein SPT23 - yeast
(Saccharomyces cerevisiae) gi|486011|emb|CAA81855.1| ORF
YKL020c [Saccharomyces cerevisiae]
Length = 1082
Score = 42.4 bits (98), Expect = 0.004
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Frame = -1
Query: 427 HSPEPNTAG------MSDVFV--REDHELHQ--DHYASPGSHSSSFPSFDTLKEDFNTSL 278
H P PN++ SD+ D+ LH+ D ++S G +SSS P+ TL DF+ +
Sbjct: 399 HFPSPNSSSEDSNHSFSDIHFSNNNDNNLHRSLDSWSSTGFNSSSNPALTTLTSDFSAA- 457
Query: 277 PGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLFSS-PNSNVGSQDHADNSRS 125
S+ H KR S+ ++P+ S PN FS P + S N S
Sbjct: 458 ---------SARHTGKRQRSV-NEPFMSTPNTFSRLPQKFIDSSKDISNHNS 499
>gb|AAA20575.1| suppressor
Length = 617
Score = 42.4 bits (98), Expect = 0.004
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Frame = -1
Query: 427 HSPEPNTAG------MSDVFV--REDHELHQ--DHYASPGSHSSSFPSFDTLKEDFNTSL 278
H P PN++ SD+ D+ LH+ D ++S G +SSS P+ TL DF+ +
Sbjct: 264 HFPSPNSSSEDSNHSFSDIHFSNNNDNNLHRSLDSWSSTGFNSSSNPALTTLTSDFSAA- 322
Query: 277 PGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLFSS-PNSNVGSQDHADNSRS 125
S+ H KR S+ ++P+ S PN FS P + S N S
Sbjct: 323 ---------SARHTGKRQRSV-NEPFMSTPNTFSRLPQKFIDSSKDISNHNS 364
>gb|ZP_00041732.1| hypothetical protein [Xylella fastidiosa Ann-1]
Length = 3437
Score = 39.7 bits (91), Expect = 0.027
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Frame = -1
Query: 496 IPDSSSENPFYAGGDNESRTERGHSPEPNTAGMSDVFV---REDHELHQDHYASPGSHSS 326
+P +S + GG S+ ER G S V R+D + + DH A+ ++ S
Sbjct: 1578 LPPQTSAYFYARGGLYASQAERRRLDLTARTGDSLVLYYTDRQDKQPNPDHVAAAATNDS 1637
Query: 325 SFPSFDTLKEDFNTSLPGDHVLGDDSSNHQPKRLPS----MDD-----------DPYFSY 191
+F DT ++D N +P + GD+ + P P+ DD DP +
Sbjct: 1638 AFIGLDTPQQDKNVDVPITYAPGDNRLTYDPTYDPTYGTCTDDCVRLVTWHDYTDPDHTL 1697
Query: 190 PNLFSSPNSNVGSQDHADNSRST 122
++ PN ++ + D +R+T
Sbjct: 1698 IDMRRGPNDVRDNEQYRDATRTT 1720
>ref|NP_701443.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496610|gb|AAN36167.1|AE014845_22 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 968
Score = 36.6 bits (83), Expect = 0.23
Identities = 36/147 (24%), Positives = 55/147 (36%), Gaps = 9/147 (6%)
Frame = -1
Query: 529 NELTKKKSSEDIPDSSSENPFYAGGDNESRTERGHSPEPNTAGMSDVFVREDHELHQDHY 350
N+ K+ S++ D S+N DNES E + SDV ++ D+
Sbjct: 688 NDEKSKEESDNKSDDESDNESDDESDNESDDESDDKRDNKCDDKSDVKSDVKSDVKSDNE 747
Query: 349 ASPGSHSSSFPSFDTLKE---DFNTSLPGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLF 179
+ S S D + D+ + D+ D SSN S D++ N+
Sbjct: 748 SDNESDDKSDDKSDDESDDESDYESDDKKDNKCDDKSSNRSLSESTSSDEN-----KNII 802
Query: 178 SSPNSNVGS------QDHADNSRSTHD 116
N N + D+ D S STHD
Sbjct: 803 DDKNKNENTSESESDNDNNDESDSTHD 829
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,317,404
Number of Sequences: 1393205
Number of extensions: 11414420
Number of successful extensions: 33382
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 31864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33303
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
