Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001094A_C01 KMC001094A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42004.1| unknown protein [Arabidopsis thaliana] gi|289510... 44 0.001
ref|NP_194292.1| unknown protein; protein id: At4g25620.1 [Arabi... 44 0.001
ref|XP_232857.1| similar to CTD (carboxy-terminal domain, RNA po... 33 2.7
dbj|BAB09567.1| disease resistance protein-like [Arabidopsis tha... 32 4.6
ref|NP_197270.1| disease resistance protein (TIR-NBS-LRR class),... 32 4.6
>dbj|BAC42004.1| unknown protein [Arabidopsis thaliana] gi|28951011|gb|AAO63429.1|
At4g25620 [Arabidopsis thaliana]
Length = 449
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/49 (44%), Positives = 31/49 (62%), Gaps = 1/49 (2%)
Frame = -1
Query: 513 SSQEFNFDTRKGDVSATAANSSEWWANKKVVGKESKS-AHSWAFFPMLQ 370
S++EF FD+ ++ SEWWAN+KV GK S +SW FFP+L+
Sbjct: 399 SNKEFKFDSTNEEMIEKIR--SEWWANEKVAGKGDHSPRNSWTFFPVLR 445
>ref|NP_194292.1| unknown protein; protein id: At4g25620.1 [Arabidopsis thaliana]
gi|7486810|pir||T05785 hypothetical protein M7J2.10 -
Arabidopsis thaliana gi|2980788|emb|CAA18164.1| putative
protein [Arabidopsis thaliana]
gi|7269412|emb|CAB81372.1| putative protein [Arabidopsis
thaliana]
Length = 424
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/49 (44%), Positives = 31/49 (62%), Gaps = 1/49 (2%)
Frame = -1
Query: 513 SSQEFNFDTRKGDVSATAANSSEWWANKKVVGKESKS-AHSWAFFPMLQ 370
S++EF FD+ ++ SEWWAN+KV GK S +SW FFP+L+
Sbjct: 374 SNKEFKFDSTNEEMIEKIR--SEWWANEKVAGKGDHSPRNSWTFFPVLR 420
>ref|XP_232857.1| similar to CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1, isoform FCP1a;
CTD of POLR2A, phosphatase of, subunit 1; transcription
factor IIF-associating CTD phosphatase 1;
TFIIF-associating CTD phosphatase 1;... [Rattus
norvegicus]
Length = 241
Score = 32.7 bits (73), Expect = 2.7
Identities = 25/79 (31%), Positives = 36/79 (44%)
Frame = +3
Query: 15 FSLLQRK*YNNPQHQIPVLLLSV*LKHEMPEVMFHRI*NPLYRSLPIPTMLLLHSTLYDP 194
F LL R N + Q+P+ +V + H +PE+MF S+P+P HS ++
Sbjct: 80 FWLLIRLQSKNGKQQVPLSTATVSMVHSVPELMF---------SVPLPH---AHSGIFQY 127
Query: 195 KGLSTECHSIIHLLHSK*F 251
CHS I HS F
Sbjct: 128 HSGVFRCHSGIFRCHSDVF 146
>dbj|BAB09567.1| disease resistance protein-like [Arabidopsis thaliana]
Length = 1295
Score = 32.0 bits (71), Expect = 4.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -2
Query: 374 YNQKSAEDIVHCNM-----TYNLYGFRQKDFPFLCRIFR 273
YNQ S + VHC M N YG R+ FLCR+F+
Sbjct: 228 YNQLSGQFQVHCFMENVKEVCNRYGVRRLQVEFLCRMFQ 266
>ref|NP_197270.1| disease resistance protein (TIR-NBS-LRR class), putative; protein
id: At5g17680.1 [Arabidopsis thaliana]
Length = 1294
Score = 32.0 bits (71), Expect = 4.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -2
Query: 374 YNQKSAEDIVHCNM-----TYNLYGFRQKDFPFLCRIFR 273
YNQ S + VHC M N YG R+ FLCR+F+
Sbjct: 227 YNQLSGQFQVHCFMENVKEVCNRYGVRRLQVEFLCRMFQ 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,323,223
Number of Sequences: 1393205
Number of extensions: 9528775
Number of successful extensions: 26565
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26562
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
