Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001093A_C01 KMC001093A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF27920.1|AF220204_1 unknown [Malus x domestica] 117 1e-25
pir||C86395 T2P11.4 protein - Arabidopsis thaliana gi|4262174|gb... 108 4e-23
ref|NP_564265.1| expressed protein; protein id: At1g26850.1, sup... 108 4e-23
pir||T05089 hypothetical protein T6K21.210 - Arabidopsis thalian... 104 9e-22
ref|NP_193537.2| putative protein; protein id: At4g18030.1, supp... 104 9e-22
>gb|AAF27920.1|AF220204_1 unknown [Malus x domestica]
Length = 608
Score = 117 bits (292), Expect = 1e-25
Identities = 56/67 (83%), Positives = 60/67 (88%)
Frame = -1
Query: 577 EMDRILRPEGVVIIRDEVDVLIKVKKIIGGMRWDTKMVDHEDGPFVPRKILVAVKQYWVG 398
EMDRILRPEG VI RDEVDVLIKVKKI+GGMRWDTK+VDHEDGP VP K+LVAVKQYWVG
Sbjct: 543 EMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKLVDHEDGPLVPEKVLVAVKQYWVG 602
Query: 397 SGKNTTS 377
N+TS
Sbjct: 603 ---NSTS 606
>pir||C86395 T2P11.4 protein - Arabidopsis thaliana gi|4262174|gb|AAD14491.1|
9058
Length = 590
Score = 108 bits (271), Expect = 4e-23
Identities = 49/65 (75%), Positives = 56/65 (85%)
Frame = -1
Query: 577 EMDRILRPEGVVIIRDEVDVLIKVKKIIGGMRWDTKMVDHEDGPFVPRKILVAVKQYWVG 398
EMDRILRPEG VIIRD+VD LIKVK+II GMRWD K+VDHEDGP VP K+L+AVKQYWV
Sbjct: 525 EMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQYWVT 584
Query: 397 SGKNT 383
+ +T
Sbjct: 585 NSTST 589
>ref|NP_564265.1| expressed protein; protein id: At1g26850.1, supported by cDNA:
gi_14335101 [Arabidopsis thaliana]
gi|14335102|gb|AAK59830.1| At1g26850/T2P11_4
[Arabidopsis thaliana] gi|23308473|gb|AAN18206.1|
At1g26850/T2P11_4 [Arabidopsis thaliana]
Length = 616
Score = 108 bits (271), Expect = 4e-23
Identities = 49/65 (75%), Positives = 56/65 (85%)
Frame = -1
Query: 577 EMDRILRPEGVVIIRDEVDVLIKVKKIIGGMRWDTKMVDHEDGPFVPRKILVAVKQYWVG 398
EMDRILRPEG VIIRD+VD LIKVK+II GMRWD K+VDHEDGP VP K+L+AVKQYWV
Sbjct: 551 EMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQYWVT 610
Query: 397 SGKNT 383
+ +T
Sbjct: 611 NSTST 615
>pir||T05089 hypothetical protein T6K21.210 - Arabidopsis thaliana
gi|2894612|emb|CAA17146.1| putative protein [Arabidopsis
thaliana] gi|7268555|emb|CAB78805.1| putative protein
[Arabidopsis thaliana]
Length = 629
Score = 104 bits (259), Expect = 9e-22
Identities = 50/74 (67%), Positives = 58/74 (77%), Gaps = 4/74 (5%)
Frame = -1
Query: 577 EMDRILRPEGVVIIRDEVDVLIKVKKIIGGMRWDTKMVDHEDGPFVPRKILVAVKQYWV- 401
E DRILRPEG+VI RDEVDVL V+KI+ GMRWDTK++DHEDGP VP KILVA KQYWV
Sbjct: 554 ETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWVA 613
Query: 400 ---GSGKNTTSNEE 368
G+ ++SN E
Sbjct: 614 GDDGNNSPSSSNSE 627
>ref|NP_193537.2| putative protein; protein id: At4g18030.1, supported by cDNA:
gi_15294145 [Arabidopsis thaliana]
gi|15294146|gb|AAK95250.1|AF410264_1 AT4g18030/T6K21_210
[Arabidopsis thaliana] gi|24797056|gb|AAN64540.1|
At4g18030/T6K21_210 [Arabidopsis thaliana]
Length = 621
Score = 104 bits (259), Expect = 9e-22
Identities = 50/74 (67%), Positives = 58/74 (77%), Gaps = 4/74 (5%)
Frame = -1
Query: 577 EMDRILRPEGVVIIRDEVDVLIKVKKIIGGMRWDTKMVDHEDGPFVPRKILVAVKQYWV- 401
E DRILRPEG+VI RDEVDVL V+KI+ GMRWDTK++DHEDGP VP KILVA KQYWV
Sbjct: 546 ETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWVA 605
Query: 400 ---GSGKNTTSNEE 368
G+ ++SN E
Sbjct: 606 GDDGNNSPSSSNSE 619
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,800,023
Number of Sequences: 1393205
Number of extensions: 11094292
Number of successful extensions: 26250
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 25391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26241
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
