Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001092A_C01 KMC001092A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK94520.1| maturase K [Achyranthes arborescens] 35 1.1
gb|AAK94574.1| maturase K [Froelichia gracilis] 33 3.3
>gb|AAK94520.1| maturase K [Achyranthes arborescens]
Length = 274
Score = 34.7 bits (78), Expect = 1.1
Identities = 24/84 (28%), Positives = 38/84 (44%), Gaps = 7/84 (8%)
Frame = -3
Query: 378 YMMYMWVATGRGLRQPQH-------HTKLNFHNFFRGKEVSASVIKS*LLQTRREAMLIR 220
Y +Y W + QP+ + L+F FF ++SV++S +L+ IR
Sbjct: 156 YFIYFWQCSFFVWSQPRRIYINQLSNYSLDFMGFFSSVRFNSSVLRSQMLENSFLLKNIR 215
Query: 219 ASFNSCNPFSPEL**LVGCKLCNV 148
F++ P P + LV K CNV
Sbjct: 216 KKFDTIVPIIPLVGSLVKAKFCNV 239
>gb|AAK94574.1| maturase K [Froelichia gracilis]
Length = 280
Score = 33.1 bits (74), Expect = 3.3
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = -3
Query: 378 YMMYMWVATGRGLRQPQH-------HTKLNFHNFFRGKEVSASVIKS*LLQTRREAMLIR 220
Y +Y W QP+ + L+F F ++SVI+S +L+ IR
Sbjct: 160 YFIYFWQCYFSVWSQPRRIYINQLSNYSLDFMGFLSNVRFNSSVIRSQMLENSFLLENIR 219
Query: 219 ASFNSCNPFSPEL**LVGCKLCNV 148
F++ P SP + L K CNV
Sbjct: 220 KKFDTIVPISPLVGSLAKAKFCNV 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,851,694
Number of Sequences: 1393205
Number of extensions: 10172405
Number of successful extensions: 16005
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16003
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
