Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001091A_C03 KMC001091A_c03
(766 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10382.2| alpha-D-xylosidase [Tropaeolum majus] 108 8e-24
ref|NP_177023.1| glycosyl hydrolase family 31 (alpha-xylosidase)... 106 2e-22
gb|AAD05539.1| alpha-xylosidase precursor [Arabidopsis thaliana] 106 2e-22
emb|CAB96077.1| alpha-glucosidase [Solanum tuberosum subsp. tube... 99 5e-20
pir||T47534 hypothetical protein F16L2.150 - Arabidopsis thalian... 90 4e-17
>emb|CAA10382.2| alpha-D-xylosidase [Tropaeolum majus]
Length = 935
Score = 108 bits (270), Expect(2) = 8e-24
Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
Frame = -2
Query: 765 LGNGYSTYIDLYATVKQGGVKVWSDVQEGKFALGKGWVIESISVLGLAGSGAVSALEING 586
LGNGYSTY++ YAT+ QG VKVWS VQEGKFAL GW IE ++VLGL+ V +LEI+G
Sbjct: 822 LGNGYSTYVEFYATLNQGAVKVWSQVQEGKFALDNGWSIEKVTVLGLSNK-QVGSLEIDG 880
Query: 585 MPIMGISDVKISTSEHKHLDGQANGESK--TVMVALKGLNIPL 463
P+ GIS V++S+SE + ESK ++MV +KGL+IP+
Sbjct: 881 SPVSGISKVEMSSSEQIFVGKLDAEESKPESLMVEVKGLDIPV 923
Score = 24.3 bits (51), Expect(2) = 8e-24
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 461 GKNFAMTWSMG 429
GKNF M+W MG
Sbjct: 924 GKNFVMSWKMG 934
>ref|NP_177023.1| glycosyl hydrolase family 31 (alpha-xylosidase); protein id:
At1g68560.1, supported by cDNA: gi_15982750 [Arabidopsis
thaliana] gi|25404752|pir||H96709 hypothetical protein
F24J5.20 [imported] - Arabidopsis thaliana
gi|5002212|gb|AAD37363.1|AF144078_1 alpha-xylosidase
precursor [Arabidopsis thaliana]
gi|5734722|gb|AAD49987.1|AC008075_20 Identical to
gb|AF144078 alpha-xylosidase precursor from Arabidopsis
thaliana. ESTs gb|W43892, gb|N96165, gb|T46694,
gb|N37141, gb|R64965, gb|R90271, gb|AA651443,
gb|AA712305, gb|T04189 and gb|AA597852 come from this
gene gi|15982751|gb|AAL09716.1| At1g68560/F24J5_10
[Arabidopsis thaliana] gi|27363344|gb|AAO11591.1|
At1g68560/F24J5_10 [Arabidopsis thaliana]
Length = 915
Score = 106 bits (265), Expect(2) = 2e-22
Identities = 52/100 (52%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Frame = -2
Query: 765 LGNGYSTYIDLYATVKQGGVKVWSDVQEGKFALGKGWVIESISVLGLAGSGAVSALEING 586
LGNG STY+D YA+V G +K+WS V+EGKFAL KGWVIE +SVLGL G+G VS ++ING
Sbjct: 803 LGNGQSTYVDFYASVGNGTMKMWSQVKEGKFALSKGWVIEKVSVLGLRGAGQVSEIQING 862
Query: 585 MPIMGISDVKISTSEHKHLDG-QANGESKTVMVALKGLNI 469
P+ +++S+ EH ++ G + E+K+VMV ++GL +
Sbjct: 863 SPM--TKKIEVSSKEHTYVIGLEDEEENKSVMVEVRGLEM 900
Score = 21.6 bits (44), Expect(2) = 2e-22
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 461 GKNFAMTWSMG 429
GK+F M+W MG
Sbjct: 903 GKDFNMSWKMG 913
>gb|AAD05539.1| alpha-xylosidase precursor [Arabidopsis thaliana]
Length = 907
Score = 106 bits (265), Expect(2) = 2e-22
Identities = 52/100 (52%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Frame = -2
Query: 765 LGNGYSTYIDLYATVKQGGVKVWSDVQEGKFALGKGWVIESISVLGLAGSGAVSALEING 586
LGNG STY+D YA+V G +K+WS V+EGKFAL KGWVIE +SVLGL G+G VS ++ING
Sbjct: 795 LGNGQSTYVDFYASVGNGTMKMWSQVKEGKFALSKGWVIEKVSVLGLRGAGQVSEIQING 854
Query: 585 MPIMGISDVKISTSEHKHLDG-QANGESKTVMVALKGLNI 469
P+ +++S+ EH ++ G + E+K+VMV ++GL +
Sbjct: 855 SPM--TKKIEVSSKEHTYVIGLEDEEENKSVMVEVRGLEM 892
Score = 21.6 bits (44), Expect(2) = 2e-22
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 461 GKNFAMTWSMG 429
GK+F M+W MG
Sbjct: 895 GKDFNMSWKMG 905
>emb|CAB96077.1| alpha-glucosidase [Solanum tuberosum subsp. tuberosum]
Length = 928
Score = 99.4 bits (246), Expect = 5e-20
Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Frame = -2
Query: 765 LGNGYSTYIDLYATVKQGGVKVWSDVQEGKFALGKGWVIESISVLGLAGSGAVSALEING 586
LGNG STY+D +AT G VK+WS+VQE K+AL KGW IE ++VLGL G G + ++G
Sbjct: 815 LGNGKSTYMDFHATTSNGTVKIWSEVQESKYALDKGWYIEKVTVLGLNGIGGAFDILVDG 874
Query: 585 MPIMGISDVKISTSEHKHLDG-QANGESKTVMVALKGLNIPLREKLCNDLEHGM 427
+ S ++ T EHK +D + G K++M+ +KGL +P+ + + G+
Sbjct: 875 SKVEDTSKLEFETEEHKFIDKLEEGGHKKSMMLDIKGLELPIGKNFAMSWKMGI 928
>pir||T47534 hypothetical protein F16L2.150 - Arabidopsis thaliana
gi|7339495|emb|CAB82818.1| putative protein [Arabidopsis
thaliana]
Length = 855
Score = 89.7 bits (221), Expect = 4e-17
Identities = 49/101 (48%), Positives = 67/101 (65%), Gaps = 2/101 (1%)
Frame = -2
Query: 765 LGNGYSTYIDLYATVKQGGVKVWSDVQEGKFALGKGWVIESISVLGLAGSGAVSALEING 586
LGNG STYID YA+V VK+WS V+EG+FAL +G VIE + VLGL G+ VS + +NG
Sbjct: 727 LGNGKSTYIDFYASVGNESVKIWSQVKEGQFALSQGLVIEKVIVLGLKGTWKVSEILLNG 786
Query: 585 MPIMG-ISDVKISTSEHKHLDG-QANGESKTVMVALKGLNI 469
I +++S+ E ++ G + GESK+ MV LKGL +
Sbjct: 787 SSISNETKTIEVSSKEQMYVVGSEDEGESKSFMVELKGLEM 827
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 666,520,151
Number of Sequences: 1393205
Number of extensions: 15004971
Number of successful extensions: 38303
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 36794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38280
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
