Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001090A_C01 KMC001090A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_694599.1| MembB [Bifidobacterium longum] gi|23194412|gb|A... 35 1.1
ref|NP_611724.1| CG9826-PA [Drosophila melanogaster] gi|7291485|... 34 1.8
dbj|BAB79358.1| ORF1 [TT virus] 33 3.1
gb|AAK98626.1| cytochrome oxidase subunit I [Cardiochiles fuscip... 33 3.1
pir||F86175 protein F19P19.17 [imported] - Arabidopsis thaliana ... 33 4.0
>ref|NP_694599.1| MembB [Bifidobacterium longum] gi|23194412|gb|AAN15155.1| MembB
[Bifidobacterium longum]
Length = 175
Score = 34.7 bits (78), Expect = 1.1
Identities = 21/41 (51%), Positives = 24/41 (58%)
Frame = +2
Query: 299 PLALSLSPSNSFSASIATQPPHTSDHDAITLSSFRSSLPQL 421
PLA S S S S+S T P SD T S+FRSSLP+L
Sbjct: 66 PLAWSQSLGMSVSSSHGTAPRSFSDCSPATCSAFRSSLPRL 106
>ref|NP_611724.1| CG9826-PA [Drosophila melanogaster] gi|7291485|gb|AAF46911.1|
CG9826-PA [Drosophila melanogaster]
Length = 495
Score = 33.9 bits (76), Expect = 1.8
Identities = 20/77 (25%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 546 WHERELQPTLQS-YSGSLIIFLSLSFICHSCRENI*DYGQDIQSCGSELLKEDNVIASWS 370
W E++ L S Y G ++ SF+C + + + SCG+ +L +++ W
Sbjct: 57 WTEKQKSYILSSFYWGYILTLFPGSFLCRRYGAKVVLF---VASCGTAVL---SLMTPWC 110
Query: 369 LVWGGWVAMLAENEFEG 319
+ WGGW A +G
Sbjct: 111 ITWGGWQVFCAIRILQG 127
>dbj|BAB79358.1| ORF1 [TT virus]
Length = 745
Score = 33.1 bits (74), Expect = 3.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 10 TLPNIY*QTTANSFFSNIDGYKGRHREIL*VAQVLKPVKLKKPSKIYLNQVKN 168
TLPN T+AN +F+ DGY G + V P L++ ++ +N ++N
Sbjct: 328 TLPNSASNTSANQYFNTYDGYWGDAIYARDIPAVEPPQTLQQAKEVLINNMEN 380
>gb|AAK98626.1| cytochrome oxidase subunit I [Cardiochiles fuscipennis]
Length = 337
Score = 33.1 bits (74), Expect = 3.1
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -3
Query: 217 AILDFDVFSFSFYSLTNFSLGLNIF*KAFLISLVLILVLPTRFPYASPCIHLYWRKMNLQ 38
A+L F ++ F++G+++ +A+ S +++ +PT S L KMN+
Sbjct: 181 AMLTIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMVIAVPTGIKVFSWLATLSGVKMNMN 240
Query: 37 LFVNIYWVM 11
L N+YW +
Sbjct: 241 L--NVYWTL 247
>pir||F86175 protein F19P19.17 [imported] - Arabidopsis thaliana
gi|2341037|gb|AAB70437.1| F19P19.17 [Arabidopsis
thaliana]
Length = 127
Score = 32.7 bits (73), Expect = 4.0
Identities = 18/61 (29%), Positives = 30/61 (48%)
Frame = -2
Query: 233 NNFIAGYFRF*CILFFLLFINKFFTWFKYILEGFFNFTGFNTCATYKISLCLPLYPSILE 54
N F+A F + I +F+ W YI+ GFFN+ T+K+ +C+ L ++
Sbjct: 72 NRFVASIFE--SFTKAMAHITRFYKWCVYIIYGFFNYL---VGLTFKLDVCVILVCMLIY 126
Query: 53 K 51
K
Sbjct: 127 K 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,476,991
Number of Sequences: 1393205
Number of extensions: 12476381
Number of successful extensions: 29967
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 29016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29953
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
