Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001088A_C01 KMC001088A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK18834.1|AC082645_4 putative alpha-coat protein [Oryza sativa] 64 1e-09
ref|NP_176393.1| coatomer alpha subunit, putative; protein id: A... 64 1e-09
gb|AAK91416.1| At1g62020/F8K4_21 [Arabidopsis thaliana] gi|24111... 64 1e-09
gb|AAK18837.1|AC082645_7 putative alpha-coat protein [Oryza sativa] 62 5e-09
gb|AAG09228.1| COP alpha homolog [Triticum aestivum] 61 1e-08
>gb|AAK18834.1|AC082645_4 putative alpha-coat protein [Oryza sativa]
Length = 1218
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/35 (82%), Positives = 32/35 (90%)
Frame = -1
Query: 532 SRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 428
SRFVPS E QLCT+C+LAVVGADASGLLCSP+Q R
Sbjct: 1184 SRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR 1218
>ref|NP_176393.1| coatomer alpha subunit, putative; protein id: At1g62020.1
[Arabidopsis thaliana] gi|7444289|pir||T02146 coatomer
complex alpha chain homolog F8K4.21 - Arabidopsis
thaliana gi|3367534|gb|AAC28519.1| Strong similarity to
coatamer alpha subunit (HEPCOP) homolog gb|U24105 from
Homo sapiens. [Arabidopsis thaliana]
Length = 1216
Score = 63.9 bits (154), Expect = 1e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -1
Query: 532 SRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 428
+RFVP+QE +CTVCDLAV+GADASGLLCSPSQ R
Sbjct: 1182 ARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 1216
>gb|AAK91416.1| At1g62020/F8K4_21 [Arabidopsis thaliana] gi|24111357|gb|AAN46802.1|
At1g62020/F8K4_21 [Arabidopsis thaliana]
Length = 495
Score = 63.9 bits (154), Expect = 1e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -1
Query: 532 SRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 428
+RFVP+QE +CTVCDLAV+GADASGLLCSPSQ R
Sbjct: 461 ARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 495
>gb|AAK18837.1|AC082645_7 putative alpha-coat protein [Oryza sativa]
Length = 1218
Score = 62.0 bits (149), Expect = 5e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -1
Query: 532 SRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 428
SRFVPS E QLCT+C+LAVVGADASGL+CSP+Q R
Sbjct: 1184 SRFVPSIEGQLCTICELAVVGADASGLVCSPTQLR 1218
>gb|AAG09228.1| COP alpha homolog [Triticum aestivum]
Length = 530
Score = 60.8 bits (146), Expect = 1e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -1
Query: 532 SRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQ 434
SRFVP+ E QLCT+C+LAVVGADASGLLCSP+Q
Sbjct: 498 SRFVPNIEGQLCTICELAVVGADASGLLCSPTQ 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,888,336
Number of Sequences: 1393205
Number of extensions: 9493953
Number of successful extensions: 21677
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21666
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
